Plant FIBer expression Database

Lus10016406 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47940 96 / 7e-23 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019713
[exp]
307 / 1e-99 AT5G47940 227 / 4e-63 unknown protein
Lus10016408
[exp]
285 / 3e-91 AT5G47940 224 / 6e-62 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G265100
[exp]
170 / 4e-49 AT5G47940 290 / 5e-86 unknown protein
Potri.009G060000
[exp]
166 / 5e-48 AT5G47940 228 / 6e-65 unknown protein
PFAM info
Representative CDS sequence
>Lus10016406 pacid=23161858 polypeptide=Lus10016406 locus=Lus10016406.g ID=Lus10016406.BGIv1.0 annot-version=v1.0
ATGGAACCGTCGGAGACTGCTCCCTCAGCTGCTTCGTCCTGGACATCTGTTACCAACTGGACCGTCGCCGGTGGCTCTGTCGACAACTCCGTCACCTTCG
AGTCCTCTCTTTCTCTCATCGACGATCTAGACAACGACAGTCTCGATCAGTCGACGGTCGGTGATGCAAATTTACGATCTCCTCTCATCCTCTACCCTCC
CTCTCCTGATTCCTCTTCCTGCGAGATCACACTTACCTTTGCACAGAAGCACGAGGTGAGGCAGGTCTATGTCAGAAGCACGGCTAGAGTCTTTGAAATA
TACTGTGATCCTGATTCGGAAAACAGTGGGGAGTATCTGTGTACTGTTCGTGGCTGTGTTGCTGTTAGAGATGAAGAAGTGCTTCGTGTAACTAATATTG
AAGAAGCTGTACTGGTGCATCAAATGGGCTCCAATAAAGAGCTGGCTGGAGATAAAACTAAAATTGGTGCTAGCCCAACTGCCAGTGAAGATGACTGGGT
TGATGTCAAGGTTCCTTGTGCTTCTCCTTCTTTTGAGAAAACTCGTTCCATGTCATCAAGTTCTGACACGGATGGAGGGTGCACCTCACAGGTATTGTGA
AA sequence
>Lus10016406 pacid=23161858 polypeptide=Lus10016406 locus=Lus10016406.g ID=Lus10016406.BGIv1.0 annot-version=v1.0
MEPSETAPSAASSWTSVTNWTVAGGSVDNSVTFESSLSLIDDLDNDSLDQSTVGDANLRSPLILYPPSPDSSSCEITLTFAQKHEVRQVYVRSTARVFEI
YCDPDSENSGEYLCTVRGCVAVRDEEVLRVTNIEEAVLVHQMGSNKELAGDKTKIGASPTASEDDWVDVKVPCASPSFEKTRSMSSSSDTDGGCTSQVL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G47940 unknown protein Lus10016406
[exp]
0 1
AT5G10940 ASG2 ALTERED SEED GERMINATION 2, tr... Lus10040537
[exp]
11.7 0.8437
AT5G56700 FBD / Leucine Rich Repeat doma... Lus10017238
[exp]
12.2 0.8064
ATMG01360 ATMG01360.1, CO... cytochrome oxidase (.1) Lus10004084
[exp]
14.1 0.8584
Lus10027106
[exp]
14.2 0.7495
ATMG01360 ATMG01360.1, CO... cytochrome oxidase (.1) Lus10009204
[exp]
20.7 0.8545
Lus10019050
[exp]
21.8 0.8369
AT5G44240 ALA2 aminophospholipid ATPase 2 (.1... Lus10018619
[exp]
25.6 0.8521
AT2G15900 Phox-associated domain;Phox-li... Lus10012043
[exp]
26.5 0.8468
AT3G51770 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODU... Lus10010041
[exp]
26.9 0.7836
AT3G60380 unknown protein Lus10042896
[exp]
29.7 0.7231

Lus10016406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.