Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63510 374 / 4e-130 FMN-linked oxidoreductases superfamily protein (.1.2) AT5G47970 367 / 2e-127 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016405 [exp] 555 / 0 AT3G63510 575 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10019714 [exp] 503 / 4e-180 AT3G63510 596 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10029508 [exp] 421 / 4e-148 AT3G63510 618 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10039605 [exp] 416 / 5e-147 AT3G63510 619 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264900 [exp] 422 / 2e-148 AT3G63510 607 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Potri.009G059900 [exp] 417 / 4e-147 AT3G63510 591 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01207 [flax] [poplar] Dus Dihydrouridine synthase (Dus)
Representative CDS sequence Show only first row Show all	>Lus10016407 pacid=23161893 polypeptide=Lus10016407 locus=Lus10016407.g ID=Lus10016407.BGIv1.0 annot-version=v1.0 ATGTTTGGTGCCGAGGCTATGTCAGTATTTGCTGCTAATACCGACGTTCCTGTCAGTGTCAAATGCCGAATTGGTCTAGATGATCATGATTCTTATAATG AGCTTTGTGATTTTATATATAAAGTGTCTGCTCTTTCCCCAACTAAGCATTTTGTAATACATTCACGGAAAGCTTTGCTCAATGGCGTCAGCCCTGCCGA CAATAGAAAAATTCCTCCTCTGAAATATGAGTACTATTATGCTCTCTTGCGTGATTTTCCTGACTTGAAATTTACAATAAATGGTGGAATCAACAATGTT GGTGAGGTTAGCTTCTCCACTGGTGTGGCATGCACCTTTCTTGCGTGCAAGTTCCCTTTGTCTGCAAATGCAGCGCTGAAGGCAGGAGCACATGGTGTAA TGGTTGGGCGTGCTGCTTATTACAATACCTGGAATGTTTTGGGACATGTTGATACTGATATTTATGGGGCACCGCCAAGTGGTCTAACACGCCGTCAGGT CCTTGAACAGTATCAAGTGTATGGTGACTCTATTCTTGGCGCCTATGGCAACAATAGGCCTAGTGTCCGGGATGTGATGAAGCCTATAATCGGATTCTTT CATTCCGAGCCTGGGAATAGCCTCTGGAAACGCAAAGCTGATGCTGCATTCCTGAAATGCAAGACGGTTAAATCCTTTTTCGACGAAGCCCTCGAAGCGA TTCCCGACAGAGTCTTGGACGCCACTGTTGCTGAAGCACCATTGGGCCGCAGAGATCTTTTTGCTAATGTAAAAGGAATCCTCCCACCTCCATATGAAAC CAGAGAAGAAGAGGAGCTGATGTATGCTTGA
AA sequence Show only first row Show all	>Lus10016407 pacid=23161893 polypeptide=Lus10016407 locus=Lus10016407.g ID=Lus10016407.BGIv1.0 annot-version=v1.0 MFGAEAMSVFAANTDVPVSVKCRIGLDDHDSYNELCDFIYKVSALSPTKHFVIHSRKALLNGVSPADNRKIPPLKYEYYYALLRDFPDLKFTINGGINNV GEVSFSTGVACTFLACKFPLSANAALKAGAHGVMVGRAAYYNTWNVLGHVDTDIYGAPPSGLTRRQVLEQYQVYGDSILGAYGNNRPSVRDVMKPIIGFF HSEPGNSLWKRKADAAFLKCKTVKSFFDEALEAIPDRVLDATVAEAPLGRRDLFANVKGILPPPYETREEEELMYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016407 [exp]	0	1
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008727 [exp]	3.9	0.8928
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	6.7	0.9109
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	8.2	0.9055
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	8.5	0.8992
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	9.5	0.9047
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	10.1	0.8913
AT2G41945			unknown protein		Lus10021080 [exp]	11.2	0.9050
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	11.8	0.9030
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10012568 [exp]	12.3	0.9065
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	13.4	0.8939

Compare expression of checked genes

Lus10016407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.