Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47940 202 / 2e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019713 [exp] 1366 / 0 AT5G47940 227 / 4e-63 unknown protein Lus10016406 [exp] 274 / 1e-86 AT5G47940 106 / 1e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G265100 [exp] 460 / 3e-149 AT5G47940 290 / 5e-86 unknown protein Potri.009G060000 [exp] 383 / 2e-121 AT5G47940 228 / 6e-65 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016408 pacid=23161828 polypeptide=Lus10016408 locus=Lus10016408.g ID=Lus10016408.BGIv1.0 annot-version=v1.0 ATGGAACCGTCGGAGACTGCTCCCTCCACTGCCTCGTCTTGGAGTTCTGCTACAAACTGGACCGTTGCCGGTGGCTCTGTCGACAACTCCGTCACCTTCG AGTCCTCTCTTTCTCTCATCGACGATCTAGACAACGACAGCAGTGCCGATCTCGATCAGTCGACGGTCGGTGATGCAAATTTACGATCTCCTCTCATCCT CTACCCTCCCTCTCCTGATTCCTCTTCCTGCGAAATCACACTTACCTTTGCACAGAAGCACGAGGTGAGGCAGGTCTATGTCAGAAGCACGGCTAGAGTC TTTGAAATATACTGTGATCCTGATTCGGAAAACAGTGGGGAGTATCTGTGTACTGTTCGTGGCTGTGTTGCTGTTAGAGGTGAAGAAGTGCTTCGTGTTA CTAATATTGAAGAAGCTGTGCTGGTGCATCAAATGGGCAGCAATAAAGAGCTGGCTGGAGATAAAACTAAAGTTGGTACTAGCCCAACTGCCAGTGAAGA TGACTGGGTTGATGTCAAGGTTCCTCGAGCTTCTCCGTCTTTCGAGAAAATTGGTTCCATGTCATCAACTTCTGACACGGATGGAGGGTGCACCTCACAG GATCTATATGAAGCTACAGCAGAGATTAGTGACACAAATCCTTGCAAGTCACTCAAGATCAGACTTCTTTCACTTCAGAACAAAGGTTGTGTATGTATTC ATGAAGTGTATGTATTTGCTGAGCCTGTTGATCAGTCTACTCTGGAAAATCAAGCAGTTCCGGTGGGAAACTCTTCTGGAATTTCACTTATGACTATGCT CCTTCCAACACTTTTCCAGTTATCTAAAACACAAGGAATTGGCAGAGATCGAGATAAACACAGCGTTGATACAGTAGAACAACAGATGTCTGTTGAGGCT AGTTTGATTTCAACTGATGAAATTGGAGCAAGAAACAGAAGTAAGGAAGAACTTGTTCCTTTCGATACTCATTCACTAGAACACAAGTTGGTGGAAGTGA GCTCATTAACATCTGATCAAATTAGTACGCACAAGGAGGTTCTGCATGAAGGAAAAGATCTTCCGCCGTTTGATGAAAGAAGTGACATTCCAGATGCAGC CCATGTTTCGGTTCCTGCTTCTGTTTCAGAAACAGATTCCAAAGGCACTTCATCCGAAAACTGCATTGGAAGTGTACTGGATCACCTTCTTTCTCGAGTC AACAGAATAGAAGATCACTTTTTGAGGTTTGAGGATAGAATTATGAAGCCTATAATCAGCATTGATGAGAGGCTCCAGCGAGTGGAGCAGCATCTTGAAT TGATCACAAAGAAAACCTGTAACCTTGGTACGAGAATTTCAGCTCCTGAATTTTGCTATAGCGAATCAGAATCCAACTCCTTCTATAACAGTGGAAGTTT AGATCTCAGTTATACGGCGAGTGAAGCAACAAAGAAAGACCCAACTATGGTCATGTCATCTATTCCCCCTGATGTCACCTCTCTTTCAGAAAGTGAAACT CTGCCACAGCTGAGTCTGTTAGCTAGTGTCCCTGAGTTCGATAATGCTAAGGATGGAACGAATCTTGCAGTGGAGTTGGCTCAGGAATCTCAGAAAGTTG AGCAAAAACATACTGTATCAATTGATGATGCTTTGGCATCTGCATTTGCTGGCTTCTTGTCTTCTACTTCATCACAGTGCCACACCTATTCTCCAATCCT TGCAGTGAGAGCTCCTGACTTTCCTAATGAGGATGAAAATGACGACAATCAAACATCTCCGTCTAGCATACAATCAGAAATTACTACAGATCCTCAAGAT AGTGATGAGATTGCAGGTCTCCCAAAGTTTCATCCTGAAGAAACCACTGAGGAAAGAGACTTGACAACTCCAATTACGTCCGTGCCCTGTAAGAAGAATG TGACCGGGTCAGTCGATGTTGAGGAACTTCTAAATGCAGAAAGAGCAGCTAATGTGCAGTGCCAGAATGGCGAAGCACATGAAGACGACGCAAACAATGT TGCTCATTTAGCTGCACTAGATAACGATGCTGTAGGAGGGGTTGATTCTCATCTAGTACTGGAAGACATAGAAAAGGGAGAGGCTAATGATTATTCAACT AGCAATGCTGCTATTCTTGAGCAAACTGAGATTTTAAAAGAATCATCGGAAGACCAGACTGATGGAAACTTCAATGATCCTCTTCATGTATTAGATTCCA CATTAGTCGCTGAACAAAACTTGAGTCAAGAGGAACTGAAGAATGTTATTCAGCTATCGAGAACCTCTTCTGCAGTTGATTACGACAACCCAATACTCGA GGTGAAATTCATTACTGAAGAGAGGTTGGATGCTGGGTCTCCTCTCCAAGCACTTTTATCCGGCTTGGGCGATCTATATATTGAAACTCCAACGACCCAA GTAGAATCTGACAACAACATATCCGGTCTTGACAGTCATGAAGATTTGCTTTCAGTAGAGCACTGGGAAGCGGCGAACTCTCCTGCAATGGACAGCTGCA TCTTCATTGATACAAACTATTGCAGCCTCGGAGATGTGAATGTGAACATGGAAGCAATAGATAAGCCAGACGATACCGTGTTGTGCAGCAACCAAGAAGG CTCTATAACAAGCCTGATATAG
AA sequence Show only first row Show all	>Lus10016408 pacid=23161828 polypeptide=Lus10016408 locus=Lus10016408.g ID=Lus10016408.BGIv1.0 annot-version=v1.0 MEPSETAPSTASSWSSATNWTVAGGSVDNSVTFESSLSLIDDLDNDSSADLDQSTVGDANLRSPLILYPPSPDSSSCEITLTFAQKHEVRQVYVRSTARV FEIYCDPDSENSGEYLCTVRGCVAVRGEEVLRVTNIEEAVLVHQMGSNKELAGDKTKVGTSPTASEDDWVDVKVPRASPSFEKIGSMSSTSDTDGGCTSQ DLYEATAEISDTNPCKSLKIRLLSLQNKGCVCIHEVYVFAEPVDQSTLENQAVPVGNSSGISLMTMLLPTLFQLSKTQGIGRDRDKHSVDTVEQQMSVEA SLISTDEIGARNRSKEELVPFDTHSLEHKLVEVSSLTSDQISTHKEVLHEGKDLPPFDERSDIPDAAHVSVPASVSETDSKGTSSENCIGSVLDHLLSRV NRIEDHFLRFEDRIMKPIISIDERLQRVEQHLELITKKTCNLGTRISAPEFCYSESESNSFYNSGSLDLSYTASEATKKDPTMVMSSIPPDVTSLSESET LPQLSLLASVPEFDNAKDGTNLAVELAQESQKVEQKHTVSIDDALASAFAGFLSSTSSQCHTYSPILAVRAPDFPNEDENDDNQTSPSSIQSEITTDPQD SDEIAGLPKFHPEETTEERDLTTPITSVPCKKNVTGSVDVEELLNAERAANVQCQNGEAHEDDANNVAHLAALDNDAVGGVDSHLVLEDIEKGEANDYST SNAAILEQTEILKESSEDQTDGNFNDPLHVLDSTLVAEQNLSQEELKNVIQLSRTSSAVDYDNPILEVKFITEERLDAGSPLQALLSGLGDLYIETPTTQ VESDNNISGLDSHEDLLSVEHWEAANSPAMDSCIFIDTNYCSLGDVNVNMEAIDKPDDTVLCSNQEGSITSLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47940			unknown protein		Lus10016408 [exp]	0	1
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10036002 [exp]	8.6	0.8146
AT5G53480			ARM repeat superfamily protein...		Lus10023246 [exp]	24.1	0.7903
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Lus10040289 [exp]	30.6	0.7656
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	37.5	0.7375
AT4G02710			Kinase interacting (KIP1-like)...		Lus10042627 [exp]	42.1	0.7552
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10009856 [exp]	57.0	0.6659
AT3G60380			unknown protein		Lus10042896 [exp]	58.3	0.6760
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10037528 [exp]	59.4	0.7198
AT5G47940			unknown protein		Lus10016406 [exp]	63.3	0.7477
AT4G30790			unknown protein		Lus10007700 [exp]	70.5	0.7162

Compare expression of checked genes

Lus10016408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.