Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63520 843 / 0 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT1G78390 338 / 1e-103 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT4G19170 333 / 2e-102 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT1G30100 333 / 3e-102 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT3G24220 327 / 2e-100 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT3G14440 326 / 1e-99 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT4G18350 309 / 1e-93 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT4G32810 91 / 1e-18 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019710 [exp] 1088 / 0 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10029513 [exp] 911 / 0 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10035696 [exp] 333 / 2e-102 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10023673 [exp] 330 / 4e-101 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10011750 [exp] 302 / 3e-91 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 254 / 4e-74 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10029512 [exp] 231 / 2e-70 AT3G63520 211 / 9e-67 carotenoid cleavage dioxygenase 1 (.1) Lus10008443 [exp] 202 / 5e-57 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10009513 [exp] 198 / 5e-54 AT3G63520 219 / 4e-64 carotenoid cleavage dioxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G060500 [exp] 858 / 0 AT3G63520 918 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265400 [exp] 857 / 0 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265900 [exp] 841 / 0 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265600 [exp] 840 / 0 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.019G093400 [exp] 350 / 1e-108 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 348 / 8e-108 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.011G112400 [exp] 347 / 2e-107 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.003G176300 [exp] 343 / 5e-106 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.009G152200 [exp] 338 / 2e-104 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G393800 [exp] 334 / 1e-102 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10016410 pacid=23161804 polypeptide=Lus10016410 locus=Lus10016410.g ID=Lus10016410.BGIv1.0 annot-version=v1.0 ATGGCCGAGAAAATCCAGGCGGAAGAGAAGCACGGCGGTCCAGTGATCGTCGCCGTCAATCCTAATCCTCAAAAGGGACTCGCCTCCACTCTTATCGACT TCCTGGAGAAGTTAACCGTCAAGTTCGGCTACCGTTCGTTGCCTCTGCCTCTTCACTATCTCTCCGGCAACTTCGCTCCCGCCGCCGAGTTCCCTCCGGC CAAAGACCTCCCTGTCAAAGGTTATCTGCCGGAATGCTTGAATGGGGAGTTTGTGAGAGTAGGTCCCAATCCCAAGTTCGCCCCTGTTGCTGGATACCAT TGGTTTGATGGCGATGGGATGATCCATGGGTTGCGTATCAAAGATGGGAAGGCGACATACGTCAGCCGTTATGTGAAGACATCTCACTTTCAGCAAGAAC AATTCCACGGAGGTCCTAAGTTCCTCAAGCTTGGGGATCTCAAGGGCCTTTTTGGCTTGTTCATGCTGAACATACGTATGCTGAGATCGAAACTGAAAGT GTTGGATTTGACATACGGGCATGGTACAGCTAATACTGCTCTTGTTTATCATCATGGGAAGCTCCTAGCACTTCAAGAGGCCGATAAGCCCTATGTGGTT AAAGTCATGGAAGATGGGGATCTGCAGACCATTGGCTTGCTAGACTATGACAAGAGGCTCAAACATTCTTTCACTGCTCACCCAAAGGTTGATCCATTCA CAGGAGAAATGTTTACCTTCGGATATTCACTAGAGCCACCATTTATCACATATAGAGTCATTTCAAAGGATGGTGTAATGCATGATCCGGTACCAATAAC GATTTCAGAGTCTATCATGATGCATGACTTCGCCATTACTGAGAATTATGCGATCTTTATGGACCTTCCTCTGTACTTCAGACCAAAGGAAATGGTGAAA CAAAAGAAGTTCTCTTTCACTTTCGATGCAGCGATAAATGCTCGTTTCGGTGTCTTACCTCGATATGCGAAAGATGACCTTATGATCAAATGGTTTGAGC TTCCGAATTGCTTCATATTTCACAATGCCAACGCTTGGGAGGAGGAGGATGAAGTTGTTCTGATTACTTGCCGCCTCGAAAATATAGACCTCGAAATGTT CTCTGGACCTGTCAAGGAAAAGATCCAGAACTTTGCAAATGAACTGTATGAAATGAGGTTCAACATGAAAACTGGAGTGGCTACACAGAAGAAACTCACA GCATCTGCTCTTGACTTCCCCAGGATCAATGAGAGCTACACTGGCAGGAAATCGTCAGGAGTTGTGATCGATGCAAAGACAATGTCAGCTGATCCTGTTG CGGTTGTTGAATTGCCCACCAGGGTTCCCCATGGATTCCATGCCTTGTTCGTCACAGAAGCGGAAGAGAAGCACAGCGGCAGCAATGTCCGCGGCGGTCC CGTGATCGTCGCCGTGAATCCTAATCCTAGAAAGGGACTCGCCTCCACTCTTATCGACTTCCTCGAGAAGCTAACCGTCAAAATCGGCTACGGTTCGTCG TCTCTGCCTTTTCACTATCTCTCCGGTCACTTTGCTCCCACCGCCGAGTTCCCTCCGGCCAAAGACCTCCCTGTCCAAGGCTATCTTCCGGAATGCTTGA ATGGAGAGTTTGTGAGAGTAGGTCCCAATCCCAAGTTCGCCCCTGTTGCTGGATACCATTGGTTTGATGGCGATGGGATGATCCATGGGTTGCGTATCAA AGATGGGAAAGCGACATATGTCAGCCGTTATGTGAAAACATCTCGACTTCAGCAGGAACAATTCTATGGAGGTCCTAAGTTCCTCAAGATTGGGGATCTC AAGGGCCTTTTTGGATTGTTCATGCTGAACATACATATCCTGAGATCGAAACTTAAAGTATTGGATTTTACATATGGAGATGGTACAGCTAATACTGCTC TAGTTTATCATCATGGGAAGCTCCTAGCACTTCAAGAGGCTGATAAACCCTATGTGGTTAAAGTAATGGAAGATGGGGATCTGCAGACCATTGGCTTGCT GGAATATGACAAGAGGCTCAAACATTCTTTCACAGCTCACCCAAAGGTTGATCCAATCACAGGAGAAATGTTTACCTTTGGATATTCACAAGAGTCACCA TTTATAACATATAGAGTCATCTCTAAGGATGGTGTAATGGATGATCCTGTACCAATAACAATTTCAGAGTCTATCATGATGCATGACTTTGCCATTACTG AGAATTATGCAATCTTTATGGACCTTCCTCTGTACTTCAGACCAAAGGAAATGGTGAAACAAAACAAGTTCGTTTTCAATTTCGATGCAGCGATAAATGC TCGTTTCGGTGTCTTACCTCGATATGCAAAAGATGACCTTATGATCAAATGGTTTCAGCTTCCAAATTGCTTCATATTTCACAATGCCAATGCGTGGGAG GAGGAGGATGAAGTTGTTCTGATCACTTGCCGCCTCGAAAATATAGACATGGATATGTTCAATGGACCTGTCAAGGAAAAGATCCAGAAGTTTGCACATG AACTATATGAAATGAGGTTCAACATGAAAACTGGAGTGGCTTCACAGAAGAAACTCACAGCATCTGCTATTGACTTCCCCAGGATCAATGAGAGCTACAC CGGCAGGAAACAAAGATACGTTTACGGGACCGTTCTAGCCAGCAACAACATAGCAACGATCACCGGAATAGTAAAAATCGATCTCCACGGCGAACCTCAG CAGCTGGAGAAAACAAAGCTGGAAGTAGGAGGAAACATCAAAGGCATATTCGAGTTTGGAAGTGGTAGGTTTGGTTCAGAAGCAGTGTATGTTCCAAAGA AGCCAGGGGCTAAGGATGATGATGAAGAAGATGATGGATATTTGATATGCTTTGTCCACGATGAAAACACTGGGAAATCGTCAGGGGTTGTGATCGATGC AAAGACAATGTCAGCTGATGCTGTTGCCGTTGTTGAATTGCCCAACAGGGTTCCCCATGGATTCCATGCATTGTTCGTCACCGAAGAACAACTTGAAGAA CAGGCTCACCTCTGA
AA sequence Show only first row Show all	>Lus10016410 pacid=23161804 polypeptide=Lus10016410 locus=Lus10016410.g ID=Lus10016410.BGIv1.0 annot-version=v1.0 MAEKIQAEEKHGGPVIVAVNPNPQKGLASTLIDFLEKLTVKFGYRSLPLPLHYLSGNFAPAAEFPPAKDLPVKGYLPECLNGEFVRVGPNPKFAPVAGYH WFDGDGMIHGLRIKDGKATYVSRYVKTSHFQQEQFHGGPKFLKLGDLKGLFGLFMLNIRMLRSKLKVLDLTYGHGTANTALVYHHGKLLALQEADKPYVV KVMEDGDLQTIGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSLEPPFITYRVISKDGVMHDPVPITISESIMMHDFAITENYAIFMDLPLYFRPKEMVK QKKFSFTFDAAINARFGVLPRYAKDDLMIKWFELPNCFIFHNANAWEEEDEVVLITCRLENIDLEMFSGPVKEKIQNFANELYEMRFNMKTGVATQKKLT ASALDFPRINESYTGRKSSGVVIDAKTMSADPVAVVELPTRVPHGFHALFVTEAEEKHSGSNVRGGPVIVAVNPNPRKGLASTLIDFLEKLTVKIGYGSS SLPFHYLSGHFAPTAEFPPAKDLPVQGYLPECLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRYVKTSRLQQEQFYGGPKFLKIGDL KGLFGLFMLNIHILRSKLKVLDFTYGDGTANTALVYHHGKLLALQEADKPYVVKVMEDGDLQTIGLLEYDKRLKHSFTAHPKVDPITGEMFTFGYSQESP FITYRVISKDGVMDDPVPITISESIMMHDFAITENYAIFMDLPLYFRPKEMVKQNKFVFNFDAAINARFGVLPRYAKDDLMIKWFQLPNCFIFHNANAWE EEDEVVLITCRLENIDMDMFNGPVKEKIQKFAHELYEMRFNMKTGVASQKKLTASAIDFPRINESYTGRKQRYVYGTVLASNNIATITGIVKIDLHGEPQ QLEKTKLEVGGNIKGIFEFGSGRFGSEAVYVPKKPGAKDDDEEDDGYLICFVHDENTGKSSGVVIDAKTMSADAVAVVELPNRVPHGFHALFVTEEQLEE QAHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10016410 [exp]	0	1
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10008910 [exp]	5.5	0.8040
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10012111 [exp]	7.7	0.8421
					Lus10003852 [exp]	8.2	0.8530
AT2G39710			Eukaryotic aspartyl protease f...		Lus10040279 [exp]	12.2	0.8433
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026892 [exp]	16.6	0.8002
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	18.8	0.8201
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10022675 [exp]	19.6	0.8285
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	25.1	0.7835
AT4G00440			Protein of unknown function (D...		Lus10017797 [exp]	34.5	0.7881
AT2G18890			Protein kinase superfamily pro...		Lus10006957 [exp]	39.8	0.7909

Compare expression of checked genes

Lus10016410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.