Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08040 518 / 2e-180 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT1G51340 508 / 1e-176 MATE efflux family protein (.1.2) AT2G38330 299 / 4e-95 MATE efflux family protein (.1) AT4G38380 295 / 6e-93 MATE efflux family protein (.1) AT2G21340 64 / 1e-10 MATE efflux family protein (.1.2) AT4G39030 48 / 1e-05 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039609 [exp] 706 / 0 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10029517 [exp] 668 / 0 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10026303 [exp] 476 / 3e-164 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10042365 [exp] 468 / 4e-161 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10027367 [exp] 466 / 3e-158 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2) Lus10012227 [exp] 301 / 3e-95 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 285 / 6e-89 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 257 / 2e-78 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10002856 [exp] 233 / 4e-70 AT2G38330 477 / 2e-165 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G266900 [exp] 641 / 0 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G061100 [exp] 641 / 0 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G053600 [exp] 527 / 0 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G053700 [exp] 522 / 0 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.016G126000 [exp] 306 / 3e-97 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G143400 [exp] 298 / 9e-94 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 297 / 2e-93 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 267 / 3e-82 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.009G122900 [exp] 65 / 7e-11 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2) Potri.009G122600 [exp] 53 / 4e-07 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10016412 pacid=23161860 polypeptide=Lus10016412 locus=Lus10016412.g ID=Lus10016412.BGIv1.0 annot-version=v1.0 ATGGCTGAAGAAGGTGCTCTGAGCATGAAGAAACAATGGCAGAGCTTGCCGATCTTCGTTTTCTTCAGAGATGCTAGGCTTGTGGTGAAGATGGATACAC TGGGAATGGAGATACTTAGGATTGCTGTACCAGCTGCCATTGCTTTGGCAGCTGACCCCGTTGCTTCCTTAGTTGATACTGTCTTCATTGGCCATTTAGG ACCGGTGGAGATAGCAGCAGTGGGAGTAGCAATAGCGATATTCAACCAAGCATCAAAGGTCACCATATTCCCACTAGTCAGCATCACGACTTCATTTGTC GCCGAGGAGGAAACTGTGCAGAGAATCATCAACCAACAGCCCCCTAAAGGTGCGGCAGGGGAAGAATCATCGGCAGGGGAATCTTCGTCGTCGTCGAACA CGACTGAAGAAGAAGGATCCGACGACGAACATCCCGACTTGGAGAACTGTCTTCCCGATCCACGAAAGGATAACAACGTCAAATCTCTTGATCATCTTGA TGGGGAAGTTGTTAGTAATAAGAGTACTAATCCACAAGTAATTAAGAAGAACATCCCTTCAGCATCCACTGCATTGGTTGTTGGAGGGTTCCTTGGGATT GCCCAAGCATTGTTCCTTGTCTTTGCAGCAAGTCCTCTACTCCACATCATGGGTGTCAAATCTGGTTCAGCAATGCTCGTCCCTGCATTGAAGTACTTGA GACTGAGATCATTAGGCTCTCCAGCAGTTCTTCTTTCTCTAGCAATGCAAGGGATTTTCCGCGGATTAAAGGACACGGAAACTCCGCTTTATGCCACCAT TGTTGGAGATGTGACAAACATCATTCTGGACCCAATATTCATATTTGTTTGCAAGCTGGGAGTTAGTGGTGCAGCCATTGCTCATGTTCTTTCACAGTAT TTGATGGCAGTCATCTTACTAATCAGACTCATGAAAATGATTGACCTCCTCCCTCCCAGTCTCAAAGACTTGCAATTCAGCCGCTTTCTTAAGAATGGAT TTTTTCTACTAGCAAAAGTTATGGCAACAACAATTTGTGTAACATTCGCTGCATCAAGGGCTACAAGGCTTGGATCAACCACAATGGCTGCCTTCCAGAT ATGCTTGCAAGTCTGGTTGACATCTTCCCTTCTTTCTGATGGCTTGGCAGTTGCTGGCCAGGCTATCATAGCTACTGCGTTTGCGGAGAAGGATTACGAC AAGGCAACAAAGGCTGCAAGCAGGGTCTTGCAAATGAGTGTGGTTGCTGGGTTGGTTCTGGCCGGAGTGGTTGGAGCTGGTTTGCACTTTGGAGACACCG TTTTCTCCAAAGATCCTAATGTTCTTCACTTTATAACCATAGGCATCCCGTTTGTTGCAGCTACACAACCACTTAACTCCATTGCCTTTGTGTTTGATGG AGTGAACTTCGGGACATCAGATTTCAGATTCTCGTGCTATTCCACGGTTTTGGTAGCCATGGCGACCCTTCCATCCGTGTACCTTCTATCGAAATCGGGT GGGTTCGTCGGGATCTGGACTTCTCTGGCCATCTTCATGGCACTAAGAGTATTTGCTGGGATCTGGAGGATGGGAACTGCAACTGGACCTTGGCGATTCC TTAGAGGCCAACATGGGACTGCTAATGTTTAG
AA sequence Show only first row Show all	>Lus10016412 pacid=23161860 polypeptide=Lus10016412 locus=Lus10016412.g ID=Lus10016412.BGIv1.0 annot-version=v1.0 MAEEGALSMKKQWQSLPIFVFFRDARLVVKMDTLGMEILRIAVPAAIALAADPVASLVDTVFIGHLGPVEIAAVGVAIAIFNQASKVTIFPLVSITTSFV AEEETVQRIINQQPPKGAAGEESSAGESSSSSNTTEEEGSDDEHPDLENCLPDPRKDNNVKSLDHLDGEVVSNKSTNPQVIKKNIPSASTALVVGGFLGI AQALFLVFAASPLLHIMGVKSGSAMLVPALKYLRLRSLGSPAVLLSLAMQGIFRGLKDTETPLYATIVGDVTNIILDPIFIFVCKLGVSGAAIAHVLSQY LMAVILLIRLMKMIDLLPPSLKDLQFSRFLKNGFFLLAKVMATTICVTFAASRATRLGSTTMAAFQICLQVWLTSSLLSDGLAVAGQAIIATAFAEKDYD KATKAASRVLQMSVVAGLVLAGVVGAGLHFGDTVFSKDPNVLHFITIGIPFVAATQPLNSIAFVFDGVNFGTSDFRFSCYSTVLVAMATLPSVYLLSKSG GFVGIWTSLAIFMALRVFAGIWRMGTATGPWRFLRGQHGTANV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	0	1
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	1.0	0.9242
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10016228 [exp]	1.4	0.9072
AT3G06880			Transducin/WD40 repeat-like su...		Lus10023666 [exp]	2.6	0.8406
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026944 [exp]	3.5	0.8487
AT5G21280			hydroxyproline-rich glycoprote...		Lus10009801 [exp]	4.9	0.8399
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026946 [exp]	8.5	0.8310
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005661 [exp]	11.0	0.7889
					Lus10008498 [exp]	11.2	0.7889
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	11.9	0.8678
AT1G71140			MATE efflux family protein (.1...		Lus10008911 [exp]	12.8	0.8005

Compare expression of checked genes

Lus10016412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.