Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13450 237 / 8e-79 ATP5 delta subunit of Mt ATP synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019706 [exp] 455 / 9e-165 AT5G13450 263 / 6e-89 delta subunit of Mt ATP synthase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G061600 [exp] 288 / 6e-99 AT5G13450 219 / 6e-72 delta subunit of Mt ATP synthase (.1.2) Potri.019G087300 [exp] 43 / 0.0001 AT4G09650 227 / 9e-75 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [flax] [poplar] ATP_synthase PF00213 [flax] [poplar] OSCP ATP synthase delta (OSCP) subunit
Representative CDS sequence Show only first row Show all	>Lus10016414 pacid=23161847 polypeptide=Lus10016414 locus=Lus10016414.g ID=Lus10016414.BGIv1.0 annot-version=v1.0 ATGGCTGGCCGTATCAGATCAGCACTTCCACTAATCAACAGGATCGCCAGATCCGATTCCTCTCTCGCTCCTCAGAGCCGCGCAATCCTCTCCCCGGCGT TCAATTCATCATCTGAGTCGTCAAGGAATTATGCCACTGCAGCTGCACCACCGAAGGAAGTGAAAATTAAGGTGCCTATTGCTTTGTACGGAGGAGCTGC CAATTATGCATCTGCTCTATTCATTGCAGCCAAAAAGGCTAATACTCTAGATAAAGTGGAGGCTGAACTTCTTGACCTTGTTCAAGCTTTAGAGAAAAGT CCTACCTTCTCTCAGTTCACCAAGGATATGTCAGTGCCTGCTGATACTAGAGTTAAGGCCATTAATGATATTACTGAACAAGCCAAATTCTGTGAAACTA CCAAGACCTTCTTGGTTGTCCTTGCTCAGAACGGAAGGTTGAGAAATGTCGATACCATAGCCAAGAAGTTTGCACAGCTGACCATGGCAGATAAAGGAAT TGTTAAGGCTACCGTGACAACAGTTGAGCCCCTGCCTGCTTCTGAGGAGAAAGAACTGAAGGAGATCCTGCAGGAGATTATCGGACAAGGGAAGAAGGTG ACACTTGAGCAGAAGATTGATGCTAGCATCCTCGGAGGCCTCGTGGTTGAGTTCTCCCAGAAGGTGTTCGACATGTCCATCAAGACAAGGGCACAACAGA TGGAGAGGTCTCTCCGGGAACCAATCAACTTCAGTTCGGCCTAG
AA sequence Show only first row Show all	>Lus10016414 pacid=23161847 polypeptide=Lus10016414 locus=Lus10016414.g ID=Lus10016414.BGIv1.0 annot-version=v1.0 MAGRIRSALPLINRIARSDSSLAPQSRAILSPAFNSSSESSRNYATAAAPPKEVKIKVPIALYGGAANYASALFIAAKKANTLDKVEAELLDLVQALEKS PTFSQFTKDMSVPADTRVKAINDITEQAKFCETTKTFLVVLAQNGRLRNVDTIAKKFAQLTMADKGIVKATVTTVEPLPASEEKELKEILQEIIGQGKKV TLEQKIDASILGGLVVEFSQKVFDMSIKTRAQQMERSLREPINFSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10016414 [exp]	0	1
AT4G29350		PRF2, PFN2, PRO...	profilin 2 (.1)		Lus10012936 [exp]	1.0	0.8572
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10034424 [exp]	3.2	0.8322
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Lus10019947 [exp]	5.8	0.7905
AT4G38710			glycine-rich protein (.1.2)		Lus10012166 [exp]	6.5	0.8120
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030889 [exp]	7.0	0.8100
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10013373 [exp]	7.7	0.8477
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10008922 [exp]	9.5	0.8433
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10041198 [exp]	10.0	0.8326
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028449 [exp]	11.2	0.8080
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10014266 [exp]	13.4	0.7892

Compare expression of checked genes

Lus10016414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.