Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63530 259 / 3e-87 BB2, BB BIG BROTHER, RING/U-box superfamily protein (.1.2) AT3G19910 109 / 3e-28 RING/U-box superfamily protein (.1) AT5G52140 95 / 6e-23 RING/U-box superfamily protein (.1) AT3G47180 84 / 2e-19 RING/U-box superfamily protein (.1) AT1G53190 83 / 4e-18 RING/U-box superfamily protein (.1.2) AT4G34040 79 / 2e-16 RING/U-box superfamily protein (.1) AT3G15070 79 / 2e-16 RING/U-box superfamily protein (.1.2) AT5G67120 76 / 3e-16 RING/U-box superfamily protein (.1) AT2G15530 76 / 1e-15 RING/U-box superfamily protein (.1.2.3.4) AT4G31450 73 / 1e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019703 [exp] 451 / 3e-163 AT3G63530 285 / 1e-97 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10031275 [exp] 155 / 8e-47 AT3G63530 174 / 4e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10031842 [exp] 139 / 2e-40 AT3G63530 160 / 1e-48 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10002554 [exp] 116 / 3e-32 AT3G63530 122 / 1e-34 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10017385 [exp] 109 / 8e-28 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10010182 [exp] 105 / 2e-26 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10029693 [exp] 80 / 8e-18 AT3G19910 105 / 1e-26 RING/U-box superfamily protein (.1) Lus10025691 [exp] 76 / 3e-16 AT3G19910 107 / 2e-27 RING/U-box superfamily protein (.1) Lus10018140 [exp] 72 / 6e-15 AT3G19910 104 / 2e-26 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G267700 [exp] 325 / 2e-113 AT3G63530 301 / 4e-104 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.009G062100 [exp] 320 / 2e-111 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.003G204500 [exp] 187 / 5e-59 AT3G63530 175 / 2e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G019600 [exp] 184 / 8e-58 AT3G63530 176 / 1e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.007G073200 [exp] 113 / 1e-29 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.005G090800 [exp] 113 / 1e-29 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.002G080900 [exp] 100 / 1e-25 AT3G47180 117 / 7e-33 RING/U-box superfamily protein (.1) Potri.005G180300 [exp] 98 / 1e-24 AT3G47180 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.012G136400 [exp] 91 / 2e-22 AT5G52140 113 / 1e-30 RING/U-box superfamily protein (.1) Potri.001G373700 [exp] 84 / 2e-18 AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016416 pacid=23161823 polypeptide=Lus10016416 locus=Lus10016416.g ID=Lus10016416.BGIv1.0 annot-version=v1.0 ATGAACGACGATAGACAAACGGAGCTGCATTACATCAATAATGGATTTCCTTACACCGCAACGGAGAGCTATATGGAGTTTTTCGATGGTTACTCACAAG TGCCTGTCAATTACGTTCATACCGAACAGCTTCATGATCATGACAATTCATATTGGTCGATGAACGCGAGTGCTTACAAATATGGATATTCCGGACCTGA GAGCATGTCTTACTATGACCCTTATGAAGTTAATGAGAATTTACCAAGACTTGATGTCAGCATTAGCACTAGATCTTGGCAATACCCCTCCGTGGCAAAT GTCGAAGACCCCACCACAACAGAAGTGCATTCTGAAGAAGAAGCCATCGCAGATTTATGCTCTATACCCGAAGAATGCATAACAGATAATCCAGGCAGCA GTAGTCCCCAGGATGTGTGGCAGGATGACGTTGATCCAGATAACATGACCTACGAGGAACTACTGGACTTGGGCGAGGCAGTAGGAACCGAGAGCCGAGG TCTGTCTGAGGAACTTATCAGTACGTTGCCAACATCCAAATGCAAGTTCGGGAGTTTCTTCTCAAGGAAGTCAGGAGAGAGGTGCGTGATATGCCAGATG AGATATAAACGAGGGGAGAAGCAGACGAAACTGCCTTGCAAGCACACTTACCATTCCGAATGCATCACCAAATGGCTTGTGATCAACAAGGTCTGCCCTG TCTGCAACAACGAAGTATTTGGCAAGGAATCGAGGGACTAG
AA sequence Show only first row Show all	>Lus10016416 pacid=23161823 polypeptide=Lus10016416 locus=Lus10016416.g ID=Lus10016416.BGIv1.0 annot-version=v1.0 MNDDRQTELHYINNGFPYTATESYMEFFDGYSQVPVNYVHTEQLHDHDNSYWSMNASAYKYGYSGPESMSYYDPYEVNENLPRLDVSISTRSWQYPSVAN VEDPTTTEVHSEEEAIADLCSIPEECITDNPGSSSPQDVWQDDVDPDNMTYEELLDLGEAVGTESRGLSEELISTLPTSKCKFGSFFSRKSGERCVICQM RYKRGEKQTKLPCKHTYHSECITKWLVINKVCPVCNNEVFGKESRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	0	1
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10019703 [exp]	1.0	0.9308
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10026195 [exp]	3.3	0.8727
AT5G25590			Protein of unknown function (D...		Lus10000014 [exp]	5.7	0.8757
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	5.9	0.8787
AT2G40760			Rhodanese/Cell cycle control p...		Lus10034243 [exp]	5.9	0.8759
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	6.7	0.8750
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	8.7	0.8630
AT2G25560			DNAJ heat shock N-terminal dom...		Lus10032540 [exp]	8.9	0.8642
					Lus10037277 [exp]	9.2	0.8676
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	10.6	0.8808

Compare expression of checked genes

Lus10016416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.