Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13490 600 / 0 AAC2 ADP/ATP carrier 2 (.1.2) AT3G08580 593 / 0 AAC1 ADP/ATP carrier 1 (.1.2) AT4G28390 516 / 0 ATAAC3, AAC3 ADP/ATP carrier 3 (.1) AT5G17400 363 / 2e-125 ER-ANT1 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) AT5G56450 195 / 4e-59 PM-ANT Mitochondrial substrate carrier family protein (.1) AT3G55640 117 / 1e-29 Mitochondrial substrate carrier family protein (.1) AT2G37890 114 / 2e-28 Mitochondrial substrate carrier family protein (.1) AT4G26180 113 / 3e-28 Mitochondrial substrate carrier family protein (.1) AT1G14560 105 / 1e-25 Mitochondrial substrate carrier family protein (.1) AT3G53940 104 / 7e-25 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019702 [exp] 716 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016418 [exp] 712 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019701 [exp] 707 / 0 AT5G13490 607 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031843 [exp] 551 / 0 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031276 [exp] 549 / 0 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10039847 [exp] 526 / 0 AT4G28390 545 / 0.0 ADP/ATP carrier 3 (.1) Lus10034658 [exp] 349 / 2e-119 AT5G17400 491 / 5e-177 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10017874 [exp] 339 / 6e-116 AT5G17400 473 / 5e-170 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10018612 [exp] 311 / 3e-106 AT5G13490 301 / 1e-102 ADP/ATP carrier 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G267800 [exp] 626 / 0 AT3G08580 592 / 0.0 ADP/ATP carrier 1 (.1.2) Potri.009G062200 [exp] 626 / 0 AT5G13490 625 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.001G019400 [exp] 602 / 0 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.003G204600 [exp] 599 / 0 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.007G139100 [exp] 538 / 0 AT4G28390 572 / 0.0 ADP/ATP carrier 3 (.1) Potri.017G012800 [exp] 537 / 0 AT4G28390 575 / 0.0 ADP/ATP carrier 3 (.1) Potri.012G062500 [exp] 336 / 3e-114 AT5G17400 416 / 5e-147 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Potri.006G227100 [exp] 198 / 2e-60 AT5G56450 462 / 4e-165 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 115 / 5e-29 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 111 / 2e-27 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10016417 pacid=23161910 polypeptide=Lus10016417 locus=Lus10016417.g ID=Lus10016417.BGIv1.0 annot-version=v1.0 ATGGTTGATCAGGTTCAACACCCCACTGTCATGCAGAAGGTTGCCTGCCAGTACCTCTCCCAGGATGTTCAGAGGTACAATGGTGCCTTCCAGAGGCCTG CCTTGTCTCAAAGACGTGCATATGGAAACTACTCCAATGCGGCATTCCAGTACTCCGGAGCTTCAACTGCTGTTGCATCCCCTGTTTTCGTCCAGGCTCC ATCCGAGAAAGGATTGGCAGGGTTTGCCATTGATTTCCTTATGGGAGGAGTGTCTGCAGCTGTTTCAGATTTCCTAATGGGAGGAGTTTCTGCAGCCGTC TCAAAAACTGCTGCTGCTCCCATTGAGCGTGTTAAGCTATTGATCCAGAACCAGGATGAGATGATCAAAACTGGAAGACTTGCTCAACCCTACAAAGGTA TTGGTGAGTGCTTCAAGAGAACCATCGCAGAAGAAGGTTTTGGTTCATTGTGGAGGGGTAACACTGCCAATGTCATCCGTTATTTCCCCACTCAGGCCTT GAACTTTGCCTTCAAAGATTACTTCAAGAGACTCTTCAACTTCAAGAAGGACAAGGATGGTTACTGGAAGTGGTTTGCTGGAAACTTGGGATCCGGTGGT GCTGCTGGTGCATCTTCACTTCTCTTTGTGTACTCTCTGGATTATGCTAGAACCCGATTGGCTAATGATGCCAAGGCTGCAAAGAAGGGTGGTGAGAGGC AATTCAATGGTCTGGTTGATGTCTACAAGAAGACTTTGGCCTCAGATGGTATTGCTGGACTCTACCGTGGGTTCAACATTTCTTGTGTCGGAATCATCGT GTACCGTGGTCTCTACTTTGGAATGTACGACTCTCTTAAGCCTGTTCTCTTGACTGGAAACCTGCAGGATAGTTTCTTCGCTAGCTTTGCCCTTGGATGG GTGATCACCAACGGTGCTGGTCTTGCATCGTACCCAATTGACACTGTCCGCAGAAGAATGATGATGACCTCCGGTGAAGCCGTGAAGTACAAGAGCTCGC TCGATGCATTCAAGCAGATTGTTAAGAACGAGGGAACCAAGTCACTCTTCAAGGGTGCTGGAGCCAACATCCTCCGTGCCGTTGCTGGTGCTGGTGTGCT CTCCGGTTACGACAAGTTGCAGTTACTTGTTTTCGGCAAGAAGTACGGATCAGGCAGCGGTTAA
AA sequence Show only first row Show all	>Lus10016417 pacid=23161910 polypeptide=Lus10016417 locus=Lus10016417.g ID=Lus10016417.BGIv1.0 annot-version=v1.0 MVDQVQHPTVMQKVACQYLSQDVQRYNGAFQRPALSQRRAYGNYSNAAFQYSGASTAVASPVFVQAPSEKGLAGFAIDFLMGGVSAAVSDFLMGGVSAAV SKTAAAPIERVKLLIQNQDEMIKTGRLAQPYKGIGECFKRTIAEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLGSGG AAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYKKTLASDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGNLQDSFFASFALGW VITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFKQIVKNEGTKSLFKGAGANILRAVAGAGVLSGYDKLQLLVFGKKYGSGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016417 [exp]	0	1
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10019701 [exp]	1.4	0.8822
AT2G04280			unknown protein		Lus10041091 [exp]	11.2	0.8328
AT1G69430			unknown protein		Lus10037135 [exp]	14.3	0.8272
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10039785 [exp]	15.4	0.8047
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10032447 [exp]	15.9	0.7983
AT5G40660			ATP12 protein-related (.1)		Lus10009910 [exp]	16.7	0.8364
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10012574 [exp]	20.9	0.8304
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Lus10043021 [exp]	25.0	0.8148
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	26.7	0.8284
AT5G07720			Galactosyl transferase GMA12/M...		Lus10000563 [exp]	31.3	0.7992

Compare expression of checked genes

Lus10016417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.