Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13490 611 / 0 AAC2 ADP/ATP carrier 2 (.1.2) AT3G08580 603 / 0 AAC1 ADP/ATP carrier 1 (.1.2) AT4G28390 530 / 0 ATAAC3, AAC3 ADP/ATP carrier 3 (.1) AT5G17400 364 / 6e-126 ER-ANT1 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) AT5G56450 196 / 7e-60 PM-ANT Mitochondrial substrate carrier family protein (.1) AT2G37890 117 / 5e-30 Mitochondrial substrate carrier family protein (.1) AT3G55640 115 / 2e-29 Mitochondrial substrate carrier family protein (.1) AT4G26180 115 / 3e-29 Mitochondrial substrate carrier family protein (.1) AT1G14560 105 / 1e-25 Mitochondrial substrate carrier family protein (.1) AT4G01100 104 / 5e-25 ADNT1 adenine nucleotide transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019701 [exp] 726 / 0 AT5G13490 607 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019702 [exp] 715 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016417 [exp] 712 / 0 AT5G13490 602 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031843 [exp] 562 / 0 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031276 [exp] 559 / 0 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10039847 [exp] 535 / 0 AT4G28390 545 / 0.0 ADP/ATP carrier 3 (.1) Lus10034658 [exp] 349 / 1e-119 AT5G17400 491 / 5e-177 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10017874 [exp] 339 / 8e-116 AT5G17400 473 / 5e-170 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10018612 [exp] 311 / 2e-106 AT5G13490 301 / 1e-102 ADP/ATP carrier 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G062200 [exp] 637 / 0 AT5G13490 625 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.001G267800 [exp] 635 / 0 AT3G08580 592 / 0.0 ADP/ATP carrier 1 (.1.2) Potri.001G019400 [exp] 610 / 0 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.003G204600 [exp] 606 / 0 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.007G139100 [exp] 548 / 0 AT4G28390 572 / 0.0 ADP/ATP carrier 3 (.1) Potri.017G012800 [exp] 544 / 0 AT4G28390 575 / 0.0 ADP/ATP carrier 3 (.1) Potri.012G062500 [exp] 338 / 4e-115 AT5G17400 416 / 5e-147 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Potri.006G227100 [exp] 201 / 8e-62 AT5G56450 462 / 4e-165 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 115 / 5e-29 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 109 / 6e-27 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10016418 pacid=23161796 polypeptide=Lus10016418 locus=Lus10016418.g ID=Lus10016418.BGIv1.0 annot-version=v1.0 ATGGTTGATCAGGTTCAACACCCCACCGTCATGCAGAAGGTTGCTGGGCAGTACCTCTCCCAGGATGTTCAGAGGTACACTGGTTCCTTCCAGAGGCCTT CCGTATCCCAAAGGCGTGCATATGGAAACTACTCCAATGCTGCATTCCAGTACTGCGGTGCTTCAACTGCTGTTGCATCTCCTGTTTTCGTCCAGGCTCC ATCTGAGAAAGGATTGGCAGGGTTTGCCATTGATTTCCTAATGGGAGGAGTTTCTGCAGCCGTCTCAAAAACTGCTGCTGCTCCCATTGAGCGTGTTAAG CTATTGATCCAGAACCAGGATGAGATGATCAAAACTGGAAGACTTGCTCAACCCTACAAAGGTATTGGTGAGTGCTTCAAGAGAACCATCGCAGAAGAAG GTTTTGGTTCATTGTGGAGGGGTAACACTGCCAATGTCATCCGTTATTTCCCCACTCAGGCCTTGAACTTTGCCTTCAAAGATTACTTCAAGAGACTCTT CAACTTCAAGAAGGACAAGGATGGTTACTGGAAGTGGTTTGCTGGAAACTTGGGATCCGGTGGTGCTGCTGGTGCATCTTCCCTTCTCTTTGTGTACTCT CTGGATTATGCCAGAACCCGATTGGCTAATGATGCCAAGGCTGCAAAGAAGGGTGGTGAGAGGCAATTCAATGGTCTGGTTGATGTCTACAAGAAGACTT TGGCCTCAGATGGTATTGCTGGACTCTACCGTGGGTTCAACATTTCTTGTGTCGGAATCATCGTGTACCGTGGTCTCTACTTTGGAATGTACGACTCTCT TAAGCCTGTTCTCTTGACTGGAAACCTGCAGGATAGTTTCTTCGCTAGCTTTGCCCTTGGATGGGTGATCACCAACGGTGCTGGTCTTGCATCGTACCCA ATTGACACTGTCCGCAGAAGAATGATGATGACCTCCGGTGAAGCTGTGAAGTACAAGAGCTCGCTCGATGCATTCAAGCAGATTGTTAAGAACGAGGGAA CCAAGTCACTCTTCAAGGGTGCTGGAGCCAACATCCTCCGTGCCGTTGCTGGTGCTGGTGTGCTCTCCGGTTACGACAAGCTGCAGTTACTTGTTTTCGG CAAGAAGTATGGATCAGGCAGCGGTTAA
AA sequence Show only first row Show all	>Lus10016418 pacid=23161796 polypeptide=Lus10016418 locus=Lus10016418.g ID=Lus10016418.BGIv1.0 annot-version=v1.0 MVDQVQHPTVMQKVAGQYLSQDVQRYTGSFQRPSVSQRRAYGNYSNAAFQYCGASTAVASPVFVQAPSEKGLAGFAIDFLMGGVSAAVSKTAAAPIERVK LLIQNQDEMIKTGRLAQPYKGIGECFKRTIAEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLGSGGAAGASSLLFVYS LDYARTRLANDAKAAKKGGERQFNGLVDVYKKTLASDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGNLQDSFFASFALGWVITNGAGLASYP IDTVRRRMMMTSGEAVKYKSSLDAFKQIVKNEGTKSLFKGAGANILRAVAGAGVLSGYDKLQLLVFGKKYGSGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016418 [exp]	0	1
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	2.8	0.8315
AT4G36420			Ribosomal protein L12 family p...		Lus10041783 [exp]	3.2	0.7453
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	10.4	0.7423
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10001959 [exp]	11.0	0.7784
AT3G51010			unknown protein		Lus10028346 [exp]	12.0	0.6869
AT5G27700			Ribosomal protein S21e (.1)		Lus10020645 [exp]	13.9	0.7577
AT4G24330			Protein of unknown function (D...		Lus10019957 [exp]	17.8	0.7581
AT3G05560			Ribosomal L22e protein family ...		Lus10026555 [exp]	19.4	0.7242
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10020941 [exp]	22.1	0.6211
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10031436 [exp]	26.4	0.7113

Compare expression of checked genes

Lus10016418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.