Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63540 240 / 2e-81 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT1G77090 55 / 6e-09 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018931 [exp] 59 / 5e-10 AT1G77090 359 / 1e-126 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10028633 [exp] 58 / 6e-10 AT1G77090 348 / 3e-122 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10030326 [exp] 42 / 0.0002 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1) Lus10003289 [exp] 40 / 0.001 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G062500 [exp] 262 / 7e-89 AT3G63540 240 / 1e-81 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.002G072400 [exp] 55 / 7e-09 AT1G77090 345 / 2e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10016419 pacid=23161835 polypeptide=Lus10016419 locus=Lus10016419.g ID=Lus10016419.BGIv1.0 annot-version=v1.0 ATGGCCGCCACCGCTACAACCTCCGCCGTCCTCTCCCAATCCCGCAACCTAACCACCGCCTCCTCCGCCGCCACCAATCAAAAATCGCAATTCCCGAATT TCCTCAAAATCAAATCCCTAACCGCCACAATCGCCGCCACAGCCATCCTAACCACCACCGCCGCCGCAACCCCGCTCCCATCCCTCGCCTCCGAATCCTC CTCTTCCTACACACTCTACTACGGCACAGCCGCCAGCGCCGCCAACTACGGAGGATACGGAGGCAACTCGGACAAAAAGGCCTCCGCCGAGTACACCTAC GACGTCCCGCAAGGATGGAAGGAACGCCTCGTATCCAAAGTCGAGAAAGGCACCAACGGCACCGACAGCGAGTTCTTCAACCCGAAGAAGAAGACGGAGA AGGAGTACTTGACTTTCCTGTCAGGGTTCAGAACTCTGGCTCCGAAAGATGCTGTGCTGGACAATCTAGCGCTGTCCGACGTGGATCTGCAGGATCTGAT TGCCGGAGCGGAGAAGGTGACGAGCGAGGAGAAGAAGGATGAGGAGAACGGGCAGGTTTATTACGAGTATGAGATCGATGGGGTTGGGAAGCATAGCTTG ATTAAGGTGACTTGTGCTAGGAATAAGCTGTATGCTCATTTTGTGAATGCTCCTTCTGTTGAGTGGGATCGCGATCAGGATACCTTGAGGCATTTGCATG ATTCGTTCAAGACTGTTGGGTGA
AA sequence Show only first row Show all	>Lus10016419 pacid=23161835 polypeptide=Lus10016419 locus=Lus10016419.g ID=Lus10016419.BGIv1.0 annot-version=v1.0 MAATATTSAVLSQSRNLTTASSAATNQKSQFPNFLKIKSLTATIAATAILTTTAAATPLPSLASESSSSYTLYYGTAASAANYGGYGGNSDKKASAEYTY DVPQGWKERLVSKVEKGTNGTDSEFFNPKKKTEKEYLTFLSGFRTLAPKDAVLDNLALSDVDLQDLIAGAEKVTSEEKKDEENGQVYYEYEIDGVGKHSL IKVTCARNKLYAHFVNAPSVEWDRDQDTLRHLHDSFKTVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Lus10016419 [exp]	0	1
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	1.0	0.9607
AT1G03600		PSB27	photosystem II family protein ...		Lus10037438 [exp]	2.4	0.9381
AT4G22250			RING/U-box superfamily protein...		Lus10035335 [exp]	4.0	0.9046
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10004155 [exp]	4.2	0.9345
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	5.9	0.9205
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	6.0	0.9313
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10004151 [exp]	7.1	0.8986
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10027148 [exp]	7.2	0.8762
AT2G34620			Mitochondrial transcription te...		Lus10032120 [exp]	7.9	0.9086
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10008567 [exp]	11.0	0.8575

Compare expression of checked genes

Lus10016419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.