Plant FIBer expression Database

Lus10016422 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G08500 884 / 0 Transmembrane CLPTM1 family protein (.1)
AT5G23575 862 / 0 Transmembrane CLPTM1 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019695
[exp]
1095 / 0 AT5G08500 944 / 0.0 Transmembrane CLPTM1 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G134500
[exp]
957 / 0 AT5G08500 873 / 0.0 Transmembrane CLPTM1 family protein (.1)
Potri.T045800
[exp]
955 / 0 AT5G08500 919 / 0.0 Transmembrane CLPTM1 family protein (.1)
Potri.018G137500
[exp]
953 / 0 AT5G08500 917 / 0.0 Transmembrane CLPTM1 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05602 CLPTM1 Cleft lip and palate transmembrane protein 1 (CLPTM1)
Representative CDS sequence
>Lus10016422 pacid=23161879 polypeptide=Lus10016422 locus=Lus10016422.g ID=Lus10016422.BGIv1.0 annot-version=v1.0
ATGGGGCAGACGATTACTGGGATCATTAGGATTGCTGTGTTTTGGTACTTCGCTTCCAAGTTCTTCTCTCCCGCCAAGAAACCCACCTCCGACCCTGCTC
TTCTCACCTCTAATTTATTCCAGAAGGGCGAGCTAATGGATATGTGGTTCTATATTTCCGAGAGTGAGAAGTTCGATGACTTCAGCAATGAAGGTGCACT
TATTTGGCATGAGACTAACATACCTTATGCGGTTTGGGGACCCCAAAGTACTAGGTCTCTTTCTGTGAAGTATTATCCCTCCGAGGCATTGAAGCACAAC
GGCAGTCTTTATGCTCATGTTTTCCTTGCACGTTCTGGGTATCCACCGGACCCAAAAGATCCAGAATACCAGCCTCTTGCTGCCTTTGGAAGGACTCATC
CCATTGTGGTCTACCTACCAAAGTCGAAATCTGATAAGAAGAAGAGTCTGCTGGATGCAAAAGGTGGCGAGGAAAGTGAACCACTGACTCAGGTGTGCAA
TTCTAGTCCGAGCAGCCCTGAGACAGATGCATATTGTTTATATCAGGTGGCTGATGATGCTGAGTCTGAGGCTAAAGATGAAGGTCCCCCAGAATGGATT
TCCTATTGGAAACCAAATGTTACCATAAACCTGATTGAAGACTTCTCCAGATATTCACAAAATGCAGTACCACCAAATATTGCTCCTTACTTGAACTTTG
AGTCTAGCACTGGGAATTACTATCCCACCATATTCTTCAATGAATTTTGGTTGCTCAGGGATAAGTTGATCGCACTGAATGATACAGTGACAGAATTGAC
ACTTAATTTGGAGGTTGGCCCAATGAGTATGACAAAGTGGCAACTGTTTCTTCAGATTGATCAGTCATTCCAGATCCATAGAAGTTATGGAAGCATGCTT
GAAGGTGAAGCTGATGAATTGAAGAGGGTTTTCCTAGAAGGAAATCCTTACCTTCTTGGTATCACAATGGTTGTTTCCTTGTTCCATTCATTGTTCGATT
TCCTGGCCTTCAAGAATGATATACAATTTTGGAATAAAAACAAGTCTATGGAAGGGTTGTCTGCAAAATCAGTTGTTGTGAACTTCATATCACAGCTCAT
CGTGTTTCTCTATCTACTTGACAACGACACTTCATGGATGATACTTGCAAGCTCTGGTGTTGGTGTATGCATCGAGTTTTGGAAAATTGGTAAAGCCATG
CACATTGAGGTCGATAGAAGTGGCAGGATACCAATGCTGAGATTCCGAGACCGCGAGTCTTATGCTGGAAACAAGACGAAAGAATACGATGACATGGCGA
TGAAGTACTTGTCATACGTGATAATGTTCCTCGCTGCATGCTTCGCTATTTATTCACTAAAGTATGAGCGTCACAAGAGCTGGTACTCCTGGATTCTCTC
GTCTTTAACCAGCTGCGTCTACATGTTCGGTTTCATCATGATGTGTCCTCAGCTGTTCATAAACTACAAGCTGAAATCCGTGGCTCATATGCCTTGGCGA
CAAATGACGTACAAGTTCCTCAACACCATCATTGACGATCTGTTTGCCTTCGTCATTAAAATGCCTATCCTGCATAGACTTTCAGTCTTCCGTGACGATA
TCATATTTCTGATCTACCTATACCAGAGGTGGGTGTACCCGGTCGACAAGAAGCGTGTGAACGAGTTTGGTTTCGGAGGCGAGGAAGAACAGGCCTCGAT
CACAGCTGGTGATGCCGCTGCTGCTGTAGCTACAGTGGAGAAAGAGGAAGAGAAGAAGACTAAGTAG
AA sequence
>Lus10016422 pacid=23161879 polypeptide=Lus10016422 locus=Lus10016422.g ID=Lus10016422.BGIv1.0 annot-version=v1.0
MGQTITGIIRIAVFWYFASKFFSPAKKPTSDPALLTSNLFQKGELMDMWFYISESEKFDDFSNEGALIWHETNIPYAVWGPQSTRSLSVKYYPSEALKHN
GSLYAHVFLARSGYPPDPKDPEYQPLAAFGRTHPIVVYLPKSKSDKKKSLLDAKGGEESEPLTQVCNSSPSSPETDAYCLYQVADDAESEAKDEGPPEWI
SYWKPNVTINLIEDFSRYSQNAVPPNIAPYLNFESSTGNYYPTIFFNEFWLLRDKLIALNDTVTELTLNLEVGPMSMTKWQLFLQIDQSFQIHRSYGSML
EGEADELKRVFLEGNPYLLGITMVVSLFHSLFDFLAFKNDIQFWNKNKSMEGLSAKSVVVNFISQLIVFLYLLDNDTSWMILASSGVGVCIEFWKIGKAM
HIEVDRSGRIPMLRFRDRESYAGNKTKEYDDMAMKYLSYVIMFLAACFAIYSLKYERHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHMPWR
QMTYKFLNTIIDDLFAFVIKMPILHRLSVFRDDIIFLIYLYQRWVYPVDKKRVNEFGFGGEEEQASITAGDAAAAVATVEKEEEKKTK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G08500 Transmembrane CLPTM1 family pr... Lus10016422
[exp]
0 1
AT1G04860 ATUBP2, UBP2 ubiquitin-specific protease 2 ... Lus10016663
[exp]
5.7 0.8870
AT1G31730 Adaptin family protein (.1) Lus10035684
[exp]
7.4 0.8963
AT5G11040 AtTRS120 TRS120 (.1) Lus10013164
[exp]
8.6 0.8875
AT4G31480 Coatomer, beta subunit (.1.2) Lus10027159
[exp]
12.6 0.8800
AT4G31480 Coatomer, beta subunit (.1.2) Lus10031570
[exp]
17.2 0.8744
AT5G65750 2-oxoglutarate dehydrogenase, ... Lus10029462
[exp]
19.1 0.8483
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Lus10031185
[exp]
19.3 0.8711
AT3G60860 SEC7-like guanine nucleotide e... Lus10009300
[exp]
20.0 0.8735
AT1G31730 Adaptin family protein (.1) Lus10037272
[exp]
21.2 0.8682
AT5G13390 NEF1 no exine formation 1 (.1) Lus10002569
[exp]
21.4 0.8530

Lus10016422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.