Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12080 711 / 0 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 667 / 0 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G53470 474 / 6e-156 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT3G14810 461 / 9e-151 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G78610 457 / 2e-149 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT2G17000 422 / 5e-136 Mechanosensitive ion channel family protein (.1) AT2G17010 313 / 1e-95 Mechanosensitive ion channel family protein (.1) AT1G49260 52 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019694 [exp] 1279 / 0 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10027617 [exp] 976 / 0 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10006347 [exp] 607 / 0 AT5G12080 659 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10002960 [exp] 582 / 0 AT5G12080 605 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036587 [exp] 514 / 8e-174 AT5G12080 549 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036586 [exp] 514 / 2e-173 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10029701 [exp] 496 / 3e-166 AT5G12080 523 / 9e-177 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10042499 [exp] 493 / 1e-162 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10038148 [exp] 492 / 2e-162 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222500 [exp] 872 / 0 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 657 / 0 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 553 / 0 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 518 / 5e-175 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.011G105500 [exp] 456 / 2e-148 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 446 / 1e-144 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 429 / 4e-139 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.004G178900 [exp] 325 / 5e-99 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.014G088200 [exp] 44 / 0.0004 AT4G00290 580 / 0.0 Mechanosensitive ion channel protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10016423 pacid=23161807 polypeptide=Lus10016423 locus=Lus10016423.g ID=Lus10016423.BGIv1.0 annot-version=v1.0 ATGAGCAAGCTCGAGGAGAACAACAAACCCACCAATGCAGGGGAGGAAGTTGTCATAACATTCAATTCAACATCCAGCCCCAATGCTCAAACGGACGCCA AGATTCCAACTTCACCCGTCCAAAACGAAACCCTTCTCAGAAGGAGGACATTTGCTAGGTCTTTGGTCTCCAAACCCAAGTCCAGATTTGGAGAGCAACC CTACACCCTTGATTCCAAAGCACTTGATGAGCACAGTTTAACCCTCCAGGAACATTTTGCCCCTAGCTCACCTTACAAGAACCTTGCATCAGATACCAGG ACTGTTTCCATAACTCAGAAATCACCTTCAAGAGAGGCAGAAGAGGAGGAAGAGGAAGAGCAGGAGAGGGAGTTAGTCCACCGTGTTGAGATACAACAAA GAAACACTACCAAGAGAGGTAAAACTGCAGGCACCAAGAATGTGATTCAATGGGCCGCCATTTTGATCATTGTGGGCTGTCTAGTAGCTTCCTTAACTGT CACTAAACTAAAAAGCACCACACTTTGGGGGCTTGTGTTGTGGAAATGGTGTGTTGTAATCATTGTGGTGTTCTATGGGTTGTTGGTGACAAGTTGGATT ATGCAAATTGTGGTTTTGTTGATTGAGATCAACTTCCTCCTTCGAAAAAAAGTTCTCTACTTTGTCCACGGCTTGAGGAAGAGCGTTCAGGTATTCGTCT GGATAGGCTTCGTGCTCGGGACATGGGCGTTTGTGTTCAGAGGCGGAGTCCACGCATCCAACACCGCCACCAAGGTGTTGGATTTTGTAACGTGGAGTCT CGTTTCGTTACTTATCGGGTCGTTCTTGTGGCTTTTGAAGACTTTGTCAATGAAGGTCTTGGCTTCTAACTATCATGTGACAAGATACTTCGATAGGATT CAGGAATCTGTGTTTCATCAATATGTGTTGCAGACATTGTCTGGTCCTCCGCTTGTGGAGGAGGCCGAGAAGGTTGGGAAAGTTCCGAGCACGGGTTTGT TGAGTGTTAGGAAGGTGAAGAAAGGGAGCAAAGGAAGTGTCAACGAGAAGAAAGTGATTGATATGGTGGAGGTTCAGAGGATGAAGAAGGAAAAGGTTTC AGCTTGGACCATGAAGGTTTTGGTTGATACTGTCACGAAATCGGGTCTTTCGACTATCTCGGATTCGTTGGATAAATGTACTTATGATAACAAAGGTGGC CAGGGTGATAGCGAGGTTTCGAATGAACTGGAAGCGACTGTTGCCGCGTTGCGCATATTCAGGAATGTTGCTCCACGTCGTAGCAAGTATATTGAAGAAG AGGATCTTTTGAGATTTATGATCAAGGAAGAGGTGGATCTGTTCTTTCCTTTGATTGAAGGTTCTGAAAGTGGGAGGATTGACAAGAAAGCTTTCACTTC ATGGGTGGTGAAAGTATACAACGGCAGAAGAACACTCGCACACGCCCTAACCGACACCAAAACAGCCGTTAAACAACTGAACAAGTTGGTAACAGGGATC CTCATCATTGCCTCAATAATCATCTGGCTTCTTCTCTTGGAGATCGCCACAACCAAAGTTCTAGTCTTTCTGTCATCACAGCTTCTTCTGGCAGCATTCA TGTTTGGAAACACTCTCAAAACCATATTCGAGGCCATCATATTTGTGTTTGTGATGCATCCATTTGATGTCGGTGATCGTTGTGTCGTTGGTGGCGTCCA GCTCTTGGTTGAAGAGATGAACATCTTAACGACGGTTTTCTTGACGTTGAACAACGAGAAGATCTTCTACCCGAACTCGGTTCTGGCTACGAAGCCGATC AGCAATTACTACAGAAGCCCTGATATGGGGGATACTGTGGAGTTTTCGATTGATTTCGCCACCCCGGTTGAGAAGATCGGGTTGCTCAGAGATAGAATCA AGAATTACTTGGAGAAGAATCCACAGCATTGGCATCCGAACCACAACATCATGGTGAAGGAGATCGAAGAAGTGAACAAGTTGAAGATGGCTCTGTACTG TAATCACACGATGAACTTCCAAGAGTTTGCAGAGAAGAACAGGAGAAGGACTGAGTTAATGATGGAGATGAAGAAGATCTTCGAGGAGCTGGATATCAAA TACTATCTCCTACCACAACGTGTTCATCTGATGAGCCATGTCCATAATGAATCAACAGATGCAATTACTTCTACACCTGCATGA
AA sequence Show only first row Show all	>Lus10016423 pacid=23161807 polypeptide=Lus10016423 locus=Lus10016423.g ID=Lus10016423.BGIv1.0 annot-version=v1.0 MSKLEENNKPTNAGEEVVITFNSTSSPNAQTDAKIPTSPVQNETLLRRRTFARSLVSKPKSRFGEQPYTLDSKALDEHSLTLQEHFAPSSPYKNLASDTR TVSITQKSPSREAEEEEEEEQERELVHRVEIQQRNTTKRGKTAGTKNVIQWAAILIIVGCLVASLTVTKLKSTTLWGLVLWKWCVVIIVVFYGLLVTSWI MQIVVLLIEINFLLRKKVLYFVHGLRKSVQVFVWIGFVLGTWAFVFRGGVHASNTATKVLDFVTWSLVSLLIGSFLWLLKTLSMKVLASNYHVTRYFDRI QESVFHQYVLQTLSGPPLVEEAEKVGKVPSTGLLSVRKVKKGSKGSVNEKKVIDMVEVQRMKKEKVSAWTMKVLVDTVTKSGLSTISDSLDKCTYDNKGG QGDSEVSNELEATVAALRIFRNVAPRRSKYIEEEDLLRFMIKEEVDLFFPLIEGSESGRIDKKAFTSWVVKVYNGRRTLAHALTDTKTAVKQLNKLVTGI LIIASIIIWLLLLEIATTKVLVFLSSQLLLAAFMFGNTLKTIFEAIIFVFVMHPFDVGDRCVVGGVQLLVEEMNILTTVFLTLNNEKIFYPNSVLATKPI SNYYRSPDMGDTVEFSIDFATPVEKIGLLRDRIKNYLEKNPQHWHPNHNIMVKEIEEVNKLKMALYCNHTMNFQEFAEKNRRRTELMMEMKKIFEELDIK YYLLPQRVHLMSHVHNESTDAITSTPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10016423 [exp]	0	1
AT2G19090			Protein of unknown function (D...		Lus10020009 [exp]	4.9	0.8480
AT5G11350			DNAse I-like superfamily prote...		Lus10013119 [exp]	5.1	0.8664
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10037398 [exp]	9.9	0.8417
AT3G43210		TES, ATNACK2	TETRASPORE, ARABIDOPSIS NPK1-A...		Lus10005181 [exp]	10.2	0.8158
AT3G27390			unknown protein		Lus10022317 [exp]	10.6	0.8219
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10032136 [exp]	11.5	0.8190
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10018933 [exp]	12.8	0.7891
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034620 [exp]	15.9	0.8538
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	16.0	0.8197
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	16.9	0.8216

Compare expression of checked genes

Lus10016423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.