Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019211 [exp] 254 / 2e-79 ND / Lus10019690 [exp] 242 / 5e-73 ND / Lus10004308 [exp] 233 / 7e-72 ND / Lus10004306 [exp] 232 / 4e-71 ND / Lus10000479 [exp] 234 / 2e-68 ND / Lus10000478 [exp] 226 / 9e-66 ND 41 / 0.004 Lus10004305 [exp] 222 / 4e-64 ND / Lus10000475 [exp] 219 / 1e-63 ND / Lus10019212 [exp] 211 / 7e-61 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016424 pacid=23161802 polypeptide=Lus10016424 locus=Lus10016424.g ID=Lus10016424.BGIv1.0 annot-version=v1.0 ATGCCTTTGTTTGCTTTCAAATCCAACAACCACTTTGTTGGTTCCTCTGATGGATCAATCCTCCAAGTCTATCAGTTAACTAAGCCGACCAATCACCTTT CTTCCATCAAGAAGGCTGACTGGAAGGAAGTCGCCACCATTACTTTCGGTCTTGAGAAAGAAGAAGAAGATGATGATGCAAAGGTGTTGTCATACGACGG GCTTCTATTCTTCGATGGATACGGAAGGATTGAGGGAGAAGAAGCGTTGGCCATCCTTGCCAAGCATTTGAAGGAGTTACACTTGTTAGTGAGTCCGGAA GGGTATTGCTTCCAACAAGTTCTTGATCTTGGAGGAGTGTACTCTGACTTTGGGATTCACTATCTTCGACTGAACGATATGTTCAGCTGGCCTCATCATG GCGTCGATCTTGTAACGACCAATGTGTGGAGCCGATCCGAGTTGACATACCGATATCTTCCTAGACACGAGGATACATCAAAGCAGCCGGCTAAAGGTGG TGGTGGGATGAGTAAGGAGAAATACAGGGAGTTGGAAAGGTCTGTAAAGGAGAAAGATGAGGAACTGGAGAAGCTCAAAGAAGAGATTGATGAGGCAAAT GAGAAGTTAAAGACGGCGGATGATGAGCACCGGAAGCAATTAAAAAAGAAGGATCGTGAATTGCGGATGCTTAGCAAGAAGAACGAAGGCGAAGAGGCGA AAACAAAGAGGATAGACGAGCTAGAGAAGCTTAACGAGGAATTGGAAGAGGCAAACAATGCTAAAGATGAAGAATTACAAAAATTCAGAAAGAAGAAGGC AAGCGAAGAAGCAAAAACAAGGAGGATAGAAGAGCTAGAGAAGTTGAAGGAGGAACTACTAAACTTGAAGAAGGTGAAGGATGAGGAGATAAGGAAAAGG ACTGAAGAGTTAGAGAAGGTGAAAGAGGAGATGGAGATTAGATTGGATGAAGAATTACGAAAGTTGAGGAGGGAGAAAACAGAGGAATTAGATATTCTCG AAAGGAAGAAGGAAGCGGAGAAGAACGATGAAACTGCGAAAACGAGAGAGGTGGAAGCAGAACTGGAAGTGGCAAGGGAGAAACTAAGTTACAGTGTAGC TGAAGTGGCAAAGGTGAAGAAAGAATTGGAAGAATGTCAAAGGAAGTCATGGGCGATTCTACCTTCCACTGAGTTTCTACCGCAAAGCTTGGAAGCCAAA GATAAGTATTTGGCCACAAGACAACGGGTTCCACCAGAAACATTTGAATGTCGCACTTATACGCTTACTTTCGTGATTAACTCGCATAAATTGATAGATA AAATGCTGGTTGATGGAGATTATGGTGTTAGGTTTGTTGACGAGGAAAGCAATCCAACCGAATGGCCACCTTTACCGGTCATCAGAGTATACATCGGCAG GGGCGATGTCGATTTCGACAAGAACAACTGGTGGTATTTGAAAACGACCCACCCGGAAGGCGGCCTGACGATGTTGGTGTATTACGAAGGAAATCGATCT CAAATCTCTCATAACGACTCCAACGATCCTATTATTCCCTTGCCGTTTTCTCCAGGCATTCATGAGGTTTATTCGTACACTCACACGTTCTCCCTCTTTA GACTCCAACCGTTTGGAGTGAGATATGGTTTCGCGTACCGACCGAGATAG
AA sequence Show only first row Show all	>Lus10016424 pacid=23161802 polypeptide=Lus10016424 locus=Lus10016424.g ID=Lus10016424.BGIv1.0 annot-version=v1.0 MPLFAFKSNNHFVGSSDGSILQVYQLTKPTNHLSSIKKADWKEVATITFGLEKEEEDDDAKVLSYDGLLFFDGYGRIEGEEALAILAKHLKELHLLVSPE GYCFQQVLDLGGVYSDFGIHYLRLNDMFSWPHHGVDLVTTNVWSRSELTYRYLPRHEDTSKQPAKGGGGMSKEKYRELERSVKEKDEELEKLKEEIDEAN EKLKTADDEHRKQLKKKDRELRMLSKKNEGEEAKTKRIDELEKLNEELEEANNAKDEELQKFRKKKASEEAKTRRIEELEKLKEELLNLKKVKDEEIRKR TEELEKVKEEMEIRLDEELRKLRREKTEELDILERKKEAEKNDETAKTREVEAELEVAREKLSYSVAEVAKVKKELEECQRKSWAILPSTEFLPQSLEAK DKYLATRQRVPPETFECRTYTLTFVINSHKLIDKMLVDGDYGVRFVDEESNPTEWPPLPVIRVYIGRGDVDFDKNNWWYLKTTHPEGGLTMLVYYEGNRS QISHNDSNDPIIPLPFSPGIHEVYSYTHTFSLFRLQPFGVRYGFAYRPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016424 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Lus10019888 [exp]	3.2	0.8689
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	6.9	0.9005
					Lus10026417 [exp]	7.2	0.8962
					Lus10012066 [exp]	8.1	0.8867
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	8.4	0.8402
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	10.6	0.8590
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	10.9	0.8278
AT5G27350		SFP1	Major facilitator superfamily ...		Lus10035355 [exp]	11.1	0.8437
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	11.3	0.9044
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10041731 [exp]	11.6	0.9036

Compare expression of checked genes

Lus10016424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.