Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22070 962 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G68930 548 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G25360 542 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 529 / 1e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 517 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 486 / 3e-161 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 481 / 3e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 481 / 6e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 476 / 7e-158 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G22690 477 / 9e-157 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030581 [exp] 612 / 0 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 603 / 0 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013540 [exp] 495 / 2e-164 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 487 / 6e-162 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 490 / 9e-162 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 481 / 1e-159 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 481 / 2e-159 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028593 [exp] 477 / 1e-158 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 483 / 2e-158 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085500 [exp] 1123 / 0 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G136200 [exp] 582 / 0 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G027800 [exp] 558 / 0 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 511 / 3e-171 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G012500 [exp] 501 / 9e-168 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 503 / 2e-167 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 502 / 2e-167 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 498 / 2e-166 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 498 / 5e-166 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 489 / 2e-162 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016425 pacid=23161887 polypeptide=Lus10016425 locus=Lus10016425.g ID=Lus10016425.BGIv1.0 annot-version=v1.0 ATGGATCTCCACAATCCAGAACTCTCCTCTTCACTCGCGACATCATATGCCAATCTCCTCCGAATGAGCCAGAAATCCAACAGCTTGATCTTGGGAAAGT CTGTTCACGCCCATATCGTCAAACACGGACTCACATTCAGCGTCTATCTAATGAACAATCTCATCAACTTGTACGCGAAAACGGGGTCCATGACCGACGC CCGCATAGTGTTCGATAGAATGCCCGAGAAGACCAACTTCACGTGGAACGGCATTCTCTCCGGCTACGCCAGAATCGGGGCAGTCGAGGAAGCCCGTCAC CTGTTCGACGAAATTCCTGAACGGGATTCCGTGTCATGGACCACTATGATCACCGGTTACAATCGAAAGGGTAAGTTTGAAAATGCGATAGAGATGTTTG CTGAGATGGTTAGAGGCGAAGTCTTCCCGTCCCAGTTCACTCTAACGAATGTACTTGCTTCCTGTGCTGCTACTGGTTCTTTGAGCGTTGGGAAGAAGGT TCATTCGTTTGTTGTTAAATTAGGATTCTGTGGATGTGTGCCGGTGGCGAACTCGCTTCTTAATATGTACGCGAAAGGGAAAGATTTGGCTATGGCCGAG GTTGTGTTCGGTAGGATGAGGTTAAAGGATATATCAAGCTGGAATACGCTTGTCACGTCGCTTTTACAGAACGGTAAGGTTGATCTTGCCGTTGAATTGT TTCATCAGATGAGCGAACGTGATATAATCACTTGGAACTCGATGATATCCGGGTTTAACCAGCTTGGTTTTGATGAACAAGCACTGAGATTCTTCTCTGA CATGATGAAGGATTCTTCTTTGTTGCCCAACAGGTTCACACTGGGAAGTGCTCTATCCGCTTGTGCCAACACAGAGAATATGAACTTTGGGAAGCAAATC CATTCATATATCATCAGAACAAAGTTCGATACTTCTGGTGCTGTCGGAAATGCTTTGGTCTCGATGTACGCGAAATCCGGAGGACTTGATATTGCACAAA GGGTCATAGACCTCAGAGGTATTGATGATCTCAATGTTATAGCCTTCACTGCCTTGTTAGATGGCTATGTCAAGATCGGGAATATCGCCCCGGCTAGAAA GATTTTCGACTCGTTGAATGAGACCGATGTGGTAGCCTGGACAGCCATGATCGTGGGTTACCTGCAAAACGGGTTCGATCATGCTGCTATGGAGCTTTTC AGGAAAATGGTTCGAGAAGGACCGAAACCGAACAGTCATACTCTATCAGCAATGTTGAGCGTCTGTTCAAACGTGGCTTCGTTAAACCTAGGTAAACAAA TTCACGCAAGTGCATTGAGATCCATGACAAGTCTATCTTCATCGGTCGGGAGTGGAATCATTACGATGTATTCGAGATCAGGAAGCATTAGGGATGCACA GAGAGTGTTCTTCAGACACATGAGATGGAGCAGAGATACAACTACATGGACTTCCATGATCATAGCATTAGCTCAACATGGTCTCGGTGAAGAATCCATC AAACTGTTTGATGAAATGATGTCGCTGTCTATCAAGCCTGACCATATAACTTATGTTGGCGTACTGTCCGCTTGTACACATATCGGACTTGTCGAAAAAG GAAGATCATACTTCAAGCTACTGAAAGATGTTCACAAAATCGAGCCGACTCTGAGCCATTACGCTTGTATGGTCGATTTGTTGGGACGTGCTGGGTTGGT AGAAGAAGCGTACGGTTTCGTCATGGATATGCCGATCGATCCTGATGTTATTATATGGGGTTCGCTCCTCTCGTCGTGTAAAGTTCATAAGAACGTCGAG CTGGCGAAAGAAGCTGCTGAGAAGCTGCTACTGATTCAACCCGACAACAGCGGTGCATACTCTTCGCTCGCGAATCTATACTCAGCCTGTGGGAAATGGG CCGATGCTGCCGAGATAAGGAAGTTGATGAAGGATAGAGGAGTAAAGAAAGAGCAAGGGTCTAGCTGGGTTCAGATTAAGAACAGAGTTCATGTGTTTGG AGCTGAAGATGGGGTGCATCCTGAGAGAGAGGAGATATATAAGAAGATGGATGAGATATGGGACGAGATAAAGAGAATGGGGTTCGTACCAGATTCTGCA TCAGTACTGCATGATCTTGAGATGGAGGTTAAGGATCGGATTCTAAGGTATCACAGTGAGAAGCTTGCTATTGCATTTGGACTGATAAGTACTCCGGAGA AGACGACTCTCAGGATAATGAAGAATCTCAGAATCTGTAACGACTGTCACACTGCTGTGAAGTATATCTCCAAGCTTGTGAGTAGGGAGATTGTTGTTAG AGATGCTACTCGCTTCCACCATTTCAGAGATGGTTCCTGTTCTTGTAAGGACTACTGGTAA
AA sequence Show only first row Show all	>Lus10016425 pacid=23161887 polypeptide=Lus10016425 locus=Lus10016425.g ID=Lus10016425.BGIv1.0 annot-version=v1.0 MDLHNPELSSSLATSYANLLRMSQKSNSLILGKSVHAHIVKHGLTFSVYLMNNLINLYAKTGSMTDARIVFDRMPEKTNFTWNGILSGYARIGAVEEARH LFDEIPERDSVSWTTMITGYNRKGKFENAIEMFAEMVRGEVFPSQFTLTNVLASCAATGSLSVGKKVHSFVVKLGFCGCVPVANSLLNMYAKGKDLAMAE VVFGRMRLKDISSWNTLVTSLLQNGKVDLAVELFHQMSERDIITWNSMISGFNQLGFDEQALRFFSDMMKDSSLLPNRFTLGSALSACANTENMNFGKQI HSYIIRTKFDTSGAVGNALVSMYAKSGGLDIAQRVIDLRGIDDLNVIAFTALLDGYVKIGNIAPARKIFDSLNETDVVAWTAMIVGYLQNGFDHAAMELF RKMVREGPKPNSHTLSAMLSVCSNVASLNLGKQIHASALRSMTSLSSSVGSGIITMYSRSGSIRDAQRVFFRHMRWSRDTTTWTSMIIALAQHGLGEESI KLFDEMMSLSIKPDHITYVGVLSACTHIGLVEKGRSYFKLLKDVHKIEPTLSHYACMVDLLGRAGLVEEAYGFVMDMPIDPDVIIWGSLLSSCKVHKNVE LAKEAAEKLLLIQPDNSGAYSSLANLYSACGKWADAAEIRKLMKDRGVKKEQGSSWVQIKNRVHVFGAEDGVHPEREEIYKKMDEIWDEIKRMGFVPDSA SVLHDLEMEVKDRILRYHSEKLAIAFGLISTPEKTTLRIMKNLRICNDCHTAVKYISKLVSREIVVRDATRFHHFRDGSCSCKDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22070			pentatricopeptide (PPR) repeat...		Lus10016425 [exp]	0	1
AT4G20770			Pentatricopeptide repeat (PPR)...		Lus10038431 [exp]	12.0	0.7741
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	21.2	0.7450
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10015809 [exp]	21.9	0.7300
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10031994 [exp]	27.8	0.7528
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	29.7	0.7506
AT2G45030			Translation elongation factor ...		Lus10039840 [exp]	30.6	0.7482
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	33.4	0.7130
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10016981 [exp]	35.6	0.7359
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10026310 [exp]	47.9	0.7119
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	59.5	0.7235

Compare expression of checked genes

Lus10016425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.