Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22120 488 / 1e-174 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G11020 179 / 8e-54 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G50440 137 / 8e-39 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT3G47550 46 / 1e-05 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 44 / 6e-05 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 42 / 0.0003 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 42 / 0.0004 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019687 [exp] 578 / 0 AT2G22120 546 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10033053 [exp] 189 / 4e-58 AT1G11020 457 / 2e-163 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017764 [exp] 138 / 1e-39 AT1G11020 254 / 3e-85 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10034832 [exp] 134 / 1e-35 AT1G50440 379 / 7e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10033381 [exp] 119 / 5e-31 AT1G50440 340 / 1e-117 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10014172 [exp] 95 / 1e-24 AT2G22120 71 / 2e-16 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035010 [exp] 45 / 4e-05 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10037172 [exp] 45 / 4e-05 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10002282 [exp] 45 / 5e-05 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G081500 [exp] 521 / 0 AT2G22120 521 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.007G085900 [exp] 419 / 7e-149 AT2G22120 388 / 4e-136 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.018G073400 [exp] 212 / 8e-67 AT1G11020 389 / 2e-136 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G154800 [exp] 207 / 8e-65 AT1G11020 406 / 4e-143 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G252900 [exp] 139 / 3e-39 AT1G50440 370 / 5e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.008G005800 [exp] 136 / 3e-38 AT1G50440 374 / 2e-132 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.004G093500 [exp] 45 / 2e-05 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G014800 [exp] 46 / 3e-05 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014950 [exp] 46 / 3e-05 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G086300 [exp] 45 / 5e-05 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016426 pacid=23161834 polypeptide=Lus10016426 locus=Lus10016426.g ID=Lus10016426.BGIv1.0 annot-version=v1.0 ATGGCTGATCATGCTGACTCGTCGCCGCTCGTCCCTCCTACGCTGATCACCAGTGAAGACTCCGAGATCGACCTCGAGGCCGGCCCCGGAGACCAAATTC AATGCCGAATTTGCCTCGAAACTGACGGGAGGGATTTCATTGCACCTTGCAAATGCAAAGGCACATCCAAGTATGTACATAGAGAATGTTTGGATCATTG GCGAGCTGTGAGGGAAGGCTTTGCATTTGCACATTGCACAACTTGCAAGGCACCTTACCATCTGAGAGTTCATGCTGCAGCAGATAGGAAATGGAGAACG ATGAAGTTTAGGTTCTTTGTGACAAGGGACATTGCTTTTATATTTCTGACGGTTCAACTTGTCATTGCCTCATTGGCATATTTGTTTTATGTAGTCGATG CCTATCAGCAGTCATGGATACGTCGTACATGGGGATTCGAGAATGGAATTAGTTTCTACTATATATGTGGAGCATTGCTGTTTTTCGCCTTGCTGGGTCT ATCAGGGTGCTTCATCACTTGCTATGACCGCAGAGTTCGCAATGATTTGGCTCAACCTTGTAGAGAGTTGTGTCTTTGCTGTTGTCATCCCGGAATGTGT GCCGACTGCCATTTGCCTGGAACTCTTTGTATGTGGACTGACTGCACCACATGCTTTGAAGGCTGTGCTAGTGCAGCTGGAGAATGTGGTTGCTTAGGAG GTGCGGGTGAAGCAGGGTTACCTTTACTCTTCATTATGGCTTTGATAGTACTCGGACTATTCACCGTGATCGGCATATTCTATAGCGTGTTGGTCGCCAC GATGGTAGGGCAACGAATTTGGCAGCGCCATTATCACATACTCGCCAAACGGATGCTGACCAAGGAGTACGTTGTCGAGGATGTTGATGGAGAGATGACC GAATCGGATTGGACACCGCCGGCCCTTCCACCAGAGCATGTCCAGCAGCTGAAGAATCTTGGCCTCCTATAA
AA sequence Show only first row Show all	>Lus10016426 pacid=23161834 polypeptide=Lus10016426 locus=Lus10016426.g ID=Lus10016426.BGIv1.0 annot-version=v1.0 MADHADSSPLVPPTLITSEDSEIDLEAGPGDQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHAAADRKWRT MKFRFFVTRDIAFIFLTVQLVIASLAYLFYVVDAYQQSWIRRTWGFENGISFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGMC ADCHLPGTLCMWTDCTTCFEGCASAAGECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMT ESDWTPPALPPEHVQQLKNLGLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10016426 [exp]	0	1
					Lus10029080 [exp]	14.5	0.5186
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10034033 [exp]	55.4	0.5124
AT3G11110			RING/U-box superfamily protein...		Lus10009832 [exp]	56.5	0.5698
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10021434 [exp]	57.1	0.5820
AT2G28310			Protein of unknown function (D...		Lus10021463 [exp]	110.5	0.5093
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	135.2	0.5584

Compare expression of checked genes

Lus10016426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.