Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72310 59 / 1e-10 ATL3 RING/U-box superfamily protein (.1) AT5G20885 55 / 1e-09 RING/U-box superfamily protein (.1) AT3G16720 56 / 2e-09 ATL2 TOXICOS EN LEVADURA 2 (.1) AT1G15100 54 / 4e-09 RHA2A RING-H2 finger A2A (.1) AT3G62690 54 / 5e-09 ATL5 AtL5 (.1) AT3G48030 54 / 6e-09 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT3G05200 54 / 7e-09 ATL6 RING/U-box superfamily protein (.1) AT2G47560 54 / 8e-09 RING/U-box superfamily protein (.1) AT4G15975 54 / 9e-09 RING/U-box superfamily protein (.1) AT5G40250 54 / 1e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019686 [exp] 275 / 2e-95 AT1G72310 62 / 1e-11 RING/U-box superfamily protein (.1) Lus10016428 [exp] 95 / 1e-24 AT5G45290 59 / 2e-11 RING/U-box superfamily protein (.1.2) Lus10003617 [exp] 94 / 2e-24 AT2G01150 63 / 6e-13 RING-H2 finger protein 2B (.1) Lus10019685 [exp] 83 / 4e-20 AT5G43200 62 / 4e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10008235 [exp] 68 / 2e-14 AT5G20885 61 / 5e-12 RING/U-box superfamily protein (.1) Lus10037264 [exp] 58 / 5e-10 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10035677 [exp] 57 / 2e-09 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10034153 [exp] 55 / 2e-09 AT2G17450 79 / 2e-18 RING-H2 finger A3A (.1) Lus10016163 [exp] 55 / 3e-09 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086300 [exp] 82 / 8e-20 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.007G086100 [exp] 73 / 2e-16 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.007G086200 [exp] 71 / 1e-15 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.005G081200 [exp] 71 / 2e-15 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.005G081300 [exp] 67 / 3e-14 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.010G047100 [exp] 55 / 7e-10 AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1) Potri.010G072700 [exp] 57 / 8e-10 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.008G125700 [exp] 55 / 1e-09 AT2G01150 125 / 5e-37 RING-H2 finger protein 2B (.1) Potri.008G165900 [exp] 56 / 2e-09 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 55 / 4e-09 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016427 pacid=23161822 polypeptide=Lus10016427 locus=Lus10016427.g ID=Lus10016427.BGIv1.0 annot-version=v1.0 ATGGCGCTCATCGCAACACCTACCCTTGTCGCCGATCTATACACCGTCGCCAAATTCTTCATCAAACTCTTCATCCTCCGCCTTGCCATCCTCTTCCGCT CCTCCTCCTCCTCCTCCGTCTCACTTACGTCCTCTTCCGGCCAAGCAACCACCAACCCACTACTCGACTTCGTAAATGAAAAGTACCCACCGACCCATTT CTACTGCGACGACGACGACAGCCTCCGCCGGCCGGAGGAAGAGTGCTCGGTGTGCCTCCGCGAGTTCTCCAAAGGCGACGCTGTGAGGAAGCTGGGTTGC GACCACACTTTCCACGTGGACTGCGTGGACCGATGGTTTGACCAGGAGCTGGCGAATAAGCGGAAAGGGATGAGTAATTTTGTTGTGACGTGTCCGCTTT GCCGGAGCGGACTCTCGTCGCCGGGAAGAGTGGATCATCGGCGGTTGGGTGGTGGTGTGGTGGGGACCACGGGGGATGACAGCTTGGAGTGGGGCCAGCA ACAGCTCTTTCTTTTGTTGGCTTCCTTGCGCGGCGATCATGAATTATCTACGCAATACTAA
AA sequence Show only first row Show all	>Lus10016427 pacid=23161822 polypeptide=Lus10016427 locus=Lus10016427.g ID=Lus10016427.BGIv1.0 annot-version=v1.0 MALIATPTLVADLYTVAKFFIKLFILRLAILFRSSSSSSVSLTSSSGQATTNPLLDFVNEKYPPTHFYCDDDDSLRRPEEECSVCLREFSKGDAVRKLGC DHTFHVDCVDRWFDQELANKRKGMSNFVVTCPLCRSGLSSPGRVDHRRLGGGVVGTTGDDSLEWGQQQLFLLLASLRGDHELSTQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10016427 [exp]	0	1
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	1.0	0.9804
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	2.0	0.9786
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10040116 [exp]	3.0	0.9769
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	5.7	0.9751
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	5.9	0.9751
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	7.3	0.9723
AT5G65380			MATE efflux family protein (.1...		Lus10012741 [exp]	10.0	0.9667
AT2G18890			Protein kinase superfamily pro...		Lus10025468 [exp]	12.4	0.9606
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	13.0	0.9681
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	13.0	0.9750

Compare expression of checked genes

Lus10016427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.