Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15100 54 / 9e-10 RHA2A RING-H2 finger A2A (.1) AT1G80400 56 / 2e-09 RING/U-box superfamily protein (.1) AT4G32600 56 / 2e-09 RING/U-box superfamily protein (.1) AT2G01150 53 / 2e-09 RHA2B RING-H2 finger protein 2B (.1) AT3G30460 53 / 3e-09 RING/U-box superfamily protein (.1) AT4G11360 53 / 4e-09 RHA1B RING-H2 finger A1B (.1) AT5G66070 53 / 7e-09 RING/U-box superfamily protein (.1.2) AT4G35840 53 / 8e-09 RING/U-box superfamily protein (.1) AT5G45290 53 / 9e-09 RING/U-box superfamily protein (.1.2) AT3G16720 52 / 1e-08 ATL2 TOXICOS EN LEVADURA 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019685 [exp] 214 / 3e-72 AT5G43200 62 / 4e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10019686 [exp] 89 / 2e-22 AT1G72310 62 / 1e-11 RING/U-box superfamily protein (.1) Lus10003617 [exp] 83 / 2e-20 AT2G01150 63 / 6e-13 RING-H2 finger protein 2B (.1) Lus10016427 [exp] 82 / 4e-20 AT1G72310 59 / 4e-11 RING/U-box superfamily protein (.1) Lus10008235 [exp] 59 / 2e-11 AT5G20885 61 / 5e-12 RING/U-box superfamily protein (.1) Lus10034153 [exp] 56 / 3e-10 AT2G17450 79 / 2e-18 RING-H2 finger A3A (.1) Lus10013210 [exp] 54 / 3e-09 AT1G20823 207 / 3e-68 RING/U-box superfamily protein (.1) Lus10007936 [exp] 53 / 4e-09 AT2G01150 104 / 3e-29 RING-H2 finger protein 2B (.1) Lus10013475 [exp] 52 / 6e-09 AT2G01150 104 / 2e-29 RING-H2 finger protein 2B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G081200 [exp] 73 / 1e-16 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.007G086300 [exp] 72 / 2e-16 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.007G086100 [exp] 71 / 7e-16 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.005G081300 [exp] 70 / 2e-15 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.007G086200 [exp] 66 / 6e-14 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.006G144200 [exp] 62 / 3e-12 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1) Potri.001G453800 [exp] 58 / 8e-11 AT5G47610 133 / 3e-39 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 57 / 5e-10 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.019G130100 [exp] 54 / 2e-09 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 55 / 3e-09 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016428 pacid=23161832 polypeptide=Lus10016428 locus=Lus10016428.g ID=Lus10016428.BGIv1.0 annot-version=v1.0 ATGTGGCCTTATAGCATCATCTCCGACCTCTACACAGTCGCCGTCTTCTTCACCAAGCTTCTACTCCTCAAACTGGCCGTCCTAACCCGACCCAACCGAA TTACCCGAACCAAACCCACCACCAATCGCCGTCGCCAATTCGTTGAGGACACGTACCCTTCGGCCAAATGGGTCTCCTCGTCGTCGGAGAAGGAGGAGGA GTGCGCGGTTTGTTTGAGCGAGTTCATGGCCGGAGAGGATGTGAGGAAATTGGGATGTAGTCATAGTTTCCACAAGGATTGCGTTGACAAGTGGCTGTTT CGAGCCGATGATCGGAAGTTGGTTGTTGTTGTTACTTGTCCGCTCTGCCGGAGGAAAGTTGATATGCCGGCGGCGGCGGAGACGCCGGTGGTGGGCTGCG GAGACGGAGGAGATTGGGGGAGTCAGCAGTTTGTTCTGTTGTTGACGAAGTTACGTGGAGATAATATATTTGATTAG
AA sequence Show only first row Show all	>Lus10016428 pacid=23161832 polypeptide=Lus10016428 locus=Lus10016428.g ID=Lus10016428.BGIv1.0 annot-version=v1.0 MWPYSIISDLYTVAVFFTKLLLLKLAVLTRPNRITRTKPTTNRRRQFVEDTYPSAKWVSSSSEKEEECAVCLSEFMAGEDVRKLGCSHSFHKDCVDKWLF RADDRKLVVVVTCPLCRRKVDMPAAAETPVVGCGDGGDWGSQQFVLLLTKLRGDNIFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	0	1
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	1.0	0.9824
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10013917 [exp]	2.0	0.9723
AT1G27040			Major facilitator superfamily ...		Lus10006477 [exp]	2.8	0.9608
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	2.8	0.9689
AT1G16310			Cation efflux family protein (...		Lus10009598 [exp]	3.0	0.9693
AT5G65980			Auxin efflux carrier family pr...		Lus10012708 [exp]	3.0	0.9600
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	3.2	0.9680
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	4.9	0.9676
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	6.0	0.9538
AT5G46970			Plant invertase/pectin methyle...		Lus10019498 [exp]	7.7	0.9508

Compare expression of checked genes

Lus10016428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.