Plant FIBer expression Database

Lus10016433 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39680 345 / 2e-109 SAP domain-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019680
[exp]
896 / 0 AT4G39680 72 / 5e-13 SAP domain-containing protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G086900
[exp]
487 / 8e-163 AT4G39680 365 / 1e-116 SAP domain-containing protein (.1.2)
Potri.005G080500
[exp]
473 / 6e-158 AT4G39680 377 / 5e-122 SAP domain-containing protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0306 HeH PF02037 SAP SAP domain
Representative CDS sequence
>Lus10016433 pacid=23161904 polypeptide=Lus10016433 locus=Lus10016433.g ID=Lus10016433.BGIv1.0 annot-version=v1.0
ATGCCATCTCAATACCCTATCCTTAATGGCAAACCACTAGAGCAGTGGAAGGTCGTAGAGCTGAGAGAAGAGCTCAAGAGTAGGAAGTTGGCGACCAAGG
GTTTGAAGGATGATCTGCTCAAGCGTTTGGCAGAAGCTCTACGCGTTGAGAGGGAAAATGCTGCTATAGAGGAGGCTGATCAGGATCAAAGTAGTGTTAA
GGAAGATGCAGAAGCAGCTGTTGTTTCAGAGACAGTTAATCATGGTGAAATGGTTGATGGTGGTTCCAATTATAAGAATGGTGATAGTGGGCAAGCTCCT
CTTGACAACAATGATAGCTCGGAAACCACGGGGCAAGAGAAACCTCAAGATGGCATATTAATAGGTGGTGCTAAGTCTCCGATTGTAGATGAGGATGTGA
CTAAAAGGGCTGTCAATGAAATTGATACAGATGAGAATGTGGCTCCTAGTTTAGTTGATAGTGGAAAAAATGCTCAAGATTCTGAAACTCGGGAATTAGA
TGACACACGAAAGAGTCAGGTGGAAGATGTAGTAGATCCAAAACCACAGGTGGAGAGTGAGGATCTGAAGTCTCAGCTGGAGACTGACAATCTAAACCCC
AAGCTGGAGACTGACGATTCGAAGCCCAAGCTTGAGAGTGACAATGGAAAACCACGACTAGATGATGACGATGTGCAGTCTGAGGTTAAAAATGAGGATT
TGAAGCCTCAGCCCGACAATCTCATGCATGACATATCTGCTCCAAATGCCCAGGTATCTGAGGTTAGCCCTAGTTTAGGGTTTCAAGCAAAATCTGATTC
AATTTCTACTGATTCTGTCTCAATTAATGAAAAAAATGAACTGAAGGATAACATAATTGCTGATAATGTCAAATTAGAACTAGATGTTGTTAAACCAGAG
ATGGTGGAAGTGTCATCAAGTAATGTGGTCCCAGTTGATGGTGAATCACATCCTATGGATGTTGAAGATCCACATGAGAAGAAGTCATCTGTTGAGGAGG
TTGGTGATGCAAGAGTAGATGATGTAGAAAAGAAAACTGATACTGTTGATGTGGTTTATTCAGAAAAGTTAAATCTAGATAGAAGTTCGGGTGATGACTC
GATGGATGAAGATATCTCGGAGATTAAACAAATCGATTCGAAAGATAATTCTGAGGTGGAGCGAAAGAACAATGAAACAAATAAAGTGCCTGCTGACAAA
GATGTTGATATCCTCGAGCTTGAGGATAATAAGCCTTCAGTGGATCAGACAAAAAATCTCACTGAGAATAAGAACCGTCAAGATGCGGCTGTTGAGAAAA
GGAAGCTTAATGACAAGGAGGCTGTGGGTGCCGAACCTTTGAAGAGGCAACGAAGGTGGAATTCTCCGAACACCAAAGCTCTGGAGCTGCAAGCTTCTAC
TCAGGCTCAAGTAACCACACCTAAGGATACTTCTCATACTCCTAGTCGCAACTTTTCTCGATCCAACTCCACAGCTAGTGATGATACACCAAAGGACCGT
GTTGTTCCACCGCCACAGAAACCTCCTACCACCTCCCTGAAAATCGATGGGTTCGTAAGACCTTTCACTCTGAAAGCTGTGCAAGAACTCCTGGGGGAGA
CTGGGACTGTGACCAGTTTCTGGATGGACAACATAAAAACACATTGCTTCTTAACCTACTCTTCCGTGGAAGAAGCCACAAATACTCGGAACGCAATATA
CAATCTTAAATGGCCTGCCAATGGTGGGCGTAATCTTACTGCCGAATTCGTCGAACCTCAGGAGGTGAAGGCAAAGCTTGAGCCACCAACTCCAGCTCCA
CCGATCACGCCAAAGACCGCTCCTTTTCCTGCTCCTGCTATTCCTTCTCCGAGGCTGCAGCCTACTAGACAGCAACTCCCACCTCCGCCGCCACTTCCAC
CACCACCACCTCTGTCGAACCCGCCACCTGTCATGGAACGGCTCGCTCCTCCACCACCACCACCTCCAGATGCACTCGAGCCTCCGATCATGACCCTGGA
CGACCTGTTCCGGAAAACCAAGGCAACCCCTCGGATTTACTACCTCCCTTTGTCGGAGGAAGAAGTTGCAGCCAAGAGGCGCGCCCAACTGGGTAAGCAA
GTGAAGCAGTAG
AA sequence
>Lus10016433 pacid=23161904 polypeptide=Lus10016433 locus=Lus10016433.g ID=Lus10016433.BGIv1.0 annot-version=v1.0
MPSQYPILNGKPLEQWKVVELREELKSRKLATKGLKDDLLKRLAEALRVERENAAIEEADQDQSSVKEDAEAAVVSETVNHGEMVDGGSNYKNGDSGQAP
LDNNDSSETTGQEKPQDGILIGGAKSPIVDEDVTKRAVNEIDTDENVAPSLVDSGKNAQDSETRELDDTRKSQVEDVVDPKPQVESEDLKSQLETDNLNP
KLETDDSKPKLESDNGKPRLDDDDVQSEVKNEDLKPQPDNLMHDISAPNAQVSEVSPSLGFQAKSDSISTDSVSINEKNELKDNIIADNVKLELDVVKPE
MVEVSSSNVVPVDGESHPMDVEDPHEKKSSVEEVGDARVDDVEKKTDTVDVVYSEKLNLDRSSGDDSMDEDISEIKQIDSKDNSEVERKNNETNKVPADK
DVDILELEDNKPSVDQTKNLTENKNRQDAAVEKRKLNDKEAVGAEPLKRQRRWNSPNTKALELQASTQAQVTTPKDTSHTPSRNFSRSNSTASDDTPKDR
VVPPPQKPPTTSLKIDGFVRPFTLKAVQELLGETGTVTSFWMDNIKTHCFLTYSSVEEATNTRNAIYNLKWPANGGRNLTAEFVEPQEVKAKLEPPTPAP
PITPKTAPFPAPAIPSPRLQPTRQQLPPPPPLPPPPPLSNPPPVMERLAPPPPPPPDALEPPIMTLDDLFRKTKATPRIYYLPLSEEEVAAKRRAQLGKQ
VKQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G39680 SAP domain-containing protein ... Lus10016433
[exp]
0 1
AT3G52210 S-adenosyl-L-methionine-depend... Lus10037917
[exp]
1.0 0.8691
AT1G51610 Cation efflux family protein (... Lus10034818
[exp]
1.4 0.8531
AT2G19170 SLP3 subtilisin-like serine proteas... Lus10011018
[exp]
2.2 0.8156
AT1G53025 Ubiquitin-conjugating enzyme f... Lus10028151
[exp]
2.4 0.8271
AT1G28760 Uncharacterized conserved prot... Lus10034420
[exp]
2.8 0.8217
AT5G03610 GDSL-like Lipase/Acylhydrolase... Lus10034139
[exp]
4.6 0.8052
AT1G29350 Kinase-related protein of unkn... Lus10000188
[exp]
7.4 0.7910
AT3G51250 Senescence/dehydration-associa... Lus10041892
[exp]
10.4 0.7651
AT2G01130 DEA(D/H)-box RNA helicase fami... Lus10007938
[exp]
10.4 0.8153
AT5G61980 AGD1 ARF-GAP domain 1 (.1) Lus10016724
[exp]
11.8 0.7771

Lus10016433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.