Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10080 481 / 3e-167 Eukaryotic aspartyl protease family protein (.1) AT4G35880 268 / 5e-84 Eukaryotic aspartyl protease family protein (.1) AT2G17760 246 / 1e-75 Eukaryotic aspartyl protease family protein (.1) AT3G51330 207 / 9e-61 Eukaryotic aspartyl protease family protein (.1) AT3G51350 199 / 6e-58 Eukaryotic aspartyl protease family protein (.1) AT3G51360 197 / 1e-57 Eukaryotic aspartyl protease family protein (.1) AT3G51340 191 / 1e-54 Eukaryotic aspartyl protease family protein (.1) AT5G43100 113 / 1e-26 Eukaryotic aspartyl protease family protein (.1) AT3G02740 112 / 1e-26 Eukaryotic aspartyl protease family protein (.1) AT1G05840 109 / 1e-25 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019678 [exp] 830 / 0 AT5G10080 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041864 [exp] 283 / 3e-90 AT4G35880 646 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028410 [exp] 284 / 3e-89 AT4G35880 672 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028411 [exp] 243 / 1e-74 AT2G17760 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041865 [exp] 234 / 3e-71 AT2G17760 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 105 / 5e-24 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 104 / 6e-24 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 101 / 1e-22 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10018709 [exp] 100 / 3e-22 AT5G43100 841 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079900 [exp] 586 / 0 AT5G10080 538 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G092100 [exp] 453 / 4e-156 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1) Potri.007G063800 [exp] 276 / 3e-87 AT4G35880 696 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G108700 [exp] 246 / 1e-75 AT2G17760 515 / 1e-179 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 115 / 1e-27 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 112 / 1e-26 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 112 / 1e-26 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 106 / 9e-25 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 104 / 1e-23 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 101 / 1e-22 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10016434 pacid=23161839 polypeptide=Lus10016434 locus=Lus10016434.g ID=Lus10016434.BGIv1.0 annot-version=v1.0 ATGAAGCTTGGACCTAGCAACCAGCTCCTCTTCCCTGCTGAAGGAAGCAACACTGTCTCCCTCGGCAATGACTTCGGATGGCTTCACTACACCATGATAG ACCTGGGGACTCCTCATGTCTCCTTCCTCGTTGCAGTAGATACTGGAAGTGATTTGCTTTGGGTTCCCTGTGAATGCTTGCAGTGTGCCCCATTATCAGC CAGTTACTATGGAAGTCTGGATCAAGATCTTAATGAATATAATCCATCTCAGTCAAGTAGTAGCAAACTCCTATCGTGCAGCGACCAGTTATGCGAACTA GGTTCAAAATGCAGAACCCAGAGTCAGCAATGCCCATACTCTGTTGAGTACTATTCGGAAAATACATCCAGTTCTGGCTTGCTGGTTCAAGATGTTTTAT ATTTTGCATCAGATGATGTTGGTACAACAAATGTTTCTCTCAAAGCTCCAGTCCTCGTGGGATGTGGCAAGAAACAAAGTGGTGGTTACTTGGATGGAAT CGCCCCTGATGGTCTCATGGGTTTGGGGCCAGGAAAAATCTCAGTTCCGAGCTTTCTCGCAAGAGCCGGGTTTGTTCAGGATTCCTTCTCCTTGTGTTTC GATGAAGAAGACTCTGGGAAAATTTATTTCGGCGATCAGGGTCCAGTTTCTCAGCACTCTACTCCGTTCCTCACGTCAAATGGAAATTACACAACCTACA TTGTCGGAGTGGAGGCATGCTGTGTTGGTGGTTCTTGTCTTAAGCAGACGAGCTTCAAGGCACTAGTTGATAGCGGCACATCTTTTACTTTTCTTCCTCG GGCGGTTTTCCAGAAGACTGCAGATGAGTTTCATAGACGGGTAAATGCTCCAATAGCAAGCTTCGACGGGTATCCTTGGAAGTACTGCTATAAGTCCAGT TCGGAGGATTCACCGAAAATTCCGTCGATGAAACTTGTGTTTGCAATGAACAACACCTTTATGATCCATAGTCCCGTATTCAAGACCTACGGTGTTCAGG GTCTAACTGGATTTTGTTTAGCCGTTCAACCATCTGATGGGGATATTGGAATTCTTGGATTGAACTTCATGACCGGGTATAGAATAGTGTTCGACAGAGA AAATCTGAAGCTAGGCTGGTCTCGCTCGGAATGTCAAGACGAGATCATCTGGGTACCGGGAAACCCAACAGGAACACCATCATCATCGTCAGCAAACCCG TTACTACCAACGAACCAGGAACAGAGGATTCCAGGACAGCACGCCGTTTCGCCAGCTGTTGCAGGTAGAGCTCCGTTGCGACCTTCTGCCACAGCGAAGC ACCGAGCATCGTCTGGCCTGGTGTCGGTGGTAAAGTTGTTGCCGGTGCTGCTTGTGTTACTGCATCGTCCTTCTTCGACTTTGTGA
AA sequence Show only first row Show all	>Lus10016434 pacid=23161839 polypeptide=Lus10016434 locus=Lus10016434.g ID=Lus10016434.BGIv1.0 annot-version=v1.0 MKLGPSNQLLFPAEGSNTVSLGNDFGWLHYTMIDLGTPHVSFLVAVDTGSDLLWVPCECLQCAPLSASYYGSLDQDLNEYNPSQSSSSKLLSCSDQLCEL GSKCRTQSQQCPYSVEYYSENTSSSGLLVQDVLYFASDDVGTTNVSLKAPVLVGCGKKQSGGYLDGIAPDGLMGLGPGKISVPSFLARAGFVQDSFSLCF DEEDSGKIYFGDQGPVSQHSTPFLTSNGNYTTYIVGVEACCVGGSCLKQTSFKALVDSGTSFTFLPRAVFQKTADEFHRRVNAPIASFDGYPWKYCYKSS SEDSPKIPSMKLVFAMNNTFMIHSPVFKTYGVQGLTGFCLAVQPSDGDIGILGLNFMTGYRIVFDRENLKLGWSRSECQDEIIWVPGNPTGTPSSSSANP LLPTNQEQRIPGQHAVSPAVAGRAPLRPSATAKHRASSGLVSVVKLLPVLLVLLHRPSSTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10080			Eukaryotic aspartyl protease f...		Lus10016434 [exp]	0	1
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Lus10041723 [exp]	1.4	0.7653
AT5G10080			Eukaryotic aspartyl protease f...		Lus10019678 [exp]	3.2	0.7626
AT5G58530			Glutaredoxin family protein (....		Lus10007517 [exp]	11.5	0.7527
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10002041 [exp]	18.6	0.7131
AT2G34620			Mitochondrial transcription te...		Lus10014567 [exp]	23.4	0.7588
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	30.1	0.7307
AT3G22440			FRIGIDA-like protein (.1)		Lus10006113 [exp]	31.5	0.7102
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10018020 [exp]	32.8	0.6793
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	35.6	0.7410
AT2G30933			Carbohydrate-binding X8 domain...		Lus10001516 [exp]	43.1	0.7172

Compare expression of checked genes

Lus10016434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.