Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01920 658 / 0 SET domain-containing protein (.1.2) AT1G14030 57 / 1e-08 Rubisco methyltransferase family protein (.1) AT1G24610 57 / 2e-08 Rubisco methyltransferase family protein (.1) AT2G18850 49 / 6e-06 SET domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019677 [exp] 361 / 1e-122 AT1G01920 262 / 5e-84 SET domain-containing protein (.1.2) Lus10036780 [exp] 47 / 4e-05 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077700 [exp] 712 / 0 AT1G01920 729 / 0.0 SET domain-containing protein (.1.2) Potri.008G134200 [exp] 61 / 1e-09 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 56 / 6e-08 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016435 pacid=23161900 polypeptide=Lus10016435 locus=Lus10016435.g ID=Lus10016435.BGIv1.0 annot-version=v1.0 ATGGCAGTCGCCGAAGAAGAAGAAGAAAAGCTCCAAACTTTCCTCCAATGGTTGCAAGTGAACAAGGTCGAGCTGCGGAGCTGTGACATCAAATACTGCG GCAGGAATAAAGGGTTCGGCTTATTTTCTTCAGCCGATGTCTCTGATGATGGAGTTCTCCTTGTTGTTCCACTAGATTTAGCAATTACTCCGATGAGGGT ACTGCAAGATCCTCTCATCGGACCGGATTGTAGAGCCATGCTCGAAGAAGGAGAAGTTGACGACAGGTTCTTGATGATCCTCTTCCTTCTCGTGGAGCGC TTAAGGGAGAATTCTTCTTGGAAACCGTACCTTGACATGCTTCCAACTACGTTTGGAAACCCGCTCTGGTTTAGTGGCAATGATCTGTTAGAGCTAAAGG GGACAGCACTGTACCGGGCATCCGAATTACAGAAGAAGAGTTTGATGTCACTTTTCGAAGATAAAGCGAAGGATCTGGTGAGGAAACTTCTTGTTCTTGA TGGGAAAACGAAAACGGAAGCCTCTTTCGAAGATTTCCTGTGGGCGAATTCTGTGTTTTGGAGTCGTGCTCTGAACATTCCTTTCCCGCGTTCCTACGTA TTTCCAACGTTTCAGGAGGATAATAATGGCGCAGAAAAATCGAAAATTACAGTTTGCGAGGAAGGCCTAGCTGCTGTTGGTCTGCCTTCCAGCTCAAGTC AAGATGAGACCGTCTGGGTAGAAGGCCTTGTTCCCGGGATTGATTTCTGCAACCATGACTTGAGGGCAATGGCTACATGGGAGGTGGATGGGACGGGCTC TAAGACTGGAACGCCTTGCTCAATGTATCTTCTTTCTGCTGAACAAAGCTTATTCGACATTGGCAAAGAGATCTCCATCAGTTATGGAAGCAAAGGCAAT GAAGAACTACTCTATCTCTATGGATTTGTGATGGAAAATAATCCAGATGACTACTTAATGGTACATTACCCCATAGAAGCACTCCGGAGTGCTCCATTTT CAGAAGCCAAGTTGCAGCTTCTTCAGGCACAGAAAGCTGAAATGAGATATCTCCTGCCCAAATCCCTGCTCAGCAAAGGGTTCTTCCCAGTGGGCGCCAC GAGAAATGGCGAAACTGACAAGTCCGAAGTGACCAAAGCTTCGAACTTTAGTTGGAGCGGTCAACGCAGGACGCCTTGTTACATCGATAAGCTGGTGTTC CCTGACGATTTCTTGACCGCCTTGAGGACCATTTCCATGCGGGAAGACGAGCTTTTCAAGGTCTCTTCATTGCTCGAAGAGCTGGTAGGTTCTGATGAAG AAAGACAGCCTACAACAAGTGAAGTGAGGACAGCCATTTGGGAAGTCTGTGGAGATTCAGGAGCCTTTCAGTTGCTTGTTGACATTCTTCAGACCAAGAT GACTGATTTGGAAGAAGGAACTGGAACAGAGGAAAAGGATTGTGAACTGCTGCTTGGAAATGCCAAGAATGCTGGAAATCACTGGTCAAGCATTGTGTAT AGAAAGGGGCAAAAGGAGATGACCAGATTGTTCCTCAAGGAAGCAGAACATGCACTCCACCTGTCGTTAACTGAAGACAACTGA
AA sequence Show only first row Show all	>Lus10016435 pacid=23161900 polypeptide=Lus10016435 locus=Lus10016435.g ID=Lus10016435.BGIv1.0 annot-version=v1.0 MAVAEEEEEKLQTFLQWLQVNKVELRSCDIKYCGRNKGFGLFSSADVSDDGVLLVVPLDLAITPMRVLQDPLIGPDCRAMLEEGEVDDRFLMILFLLVER LRENSSWKPYLDMLPTTFGNPLWFSGNDLLELKGTALYRASELQKKSLMSLFEDKAKDLVRKLLVLDGKTKTEASFEDFLWANSVFWSRALNIPFPRSYV FPTFQEDNNGAEKSKITVCEEGLAAVGLPSSSSQDETVWVEGLVPGIDFCNHDLRAMATWEVDGTGSKTGTPCSMYLLSAEQSLFDIGKEISISYGSKGN EELLYLYGFVMENNPDDYLMVHYPIEALRSAPFSEAKLQLLQAQKAEMRYLLPKSLLSKGFFPVGATRNGETDKSEVTKASNFSWSGQRRTPCYIDKLVF PDDFLTALRTISMREDELFKVSSLLEELVGSDEERQPTTSEVRTAIWEVCGDSGAFQLLVDILQTKMTDLEEGTGTEEKDCELLLGNAKNAGNHWSSIVY RKGQKEMTRLFLKEAEHALHLSLTEDN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01920			SET domain-containing protein ...		Lus10016435 [exp]	0	1
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10014161 [exp]	2.8	0.6995
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10019350 [exp]	2.8	0.7643
AT5G53500			Transducin/WD40 repeat-like su...		Lus10011313 [exp]	3.0	0.6712
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	3.3	0.7765
					Lus10000293 [exp]	9.9	0.6550
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	10.4	0.7486
AT4G09940			P-loop containing nucleoside t...		Lus10028023 [exp]	15.9	0.6793
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040148 [exp]	17.0	0.6501
					Lus10026124 [exp]	17.3	0.6978
AT4G23330			unknown protein		Lus10024630 [exp]	22.5	0.6300

Compare expression of checked genes

Lus10016435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.