Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) AT1G22990 182 / 5e-60 HIPP22 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 180 / 7e-59 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 172 / 7e-56 Heavy metal transport/detoxification superfamily protein (.1) AT4G38580 166 / 2e-53 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) AT5G66110 152 / 6e-48 HIPP27 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1) AT5G17450 148 / 1e-46 HIPP21 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) AT4G35060 139 / 5e-43 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1) AT2G18196 107 / 6e-30 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 101 / 6e-28 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019676 [exp] 320 / 2e-114 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10022508 [exp] 244 / 4e-84 AT4G39700 201 / 2e-67 Heavy metal transport/detoxification superfamily protein (.1) Lus10016812 [exp] 224 / 5e-76 AT4G39700 181 / 3e-59 Heavy metal transport/detoxification superfamily protein (.1) Lus10039419 [exp] 188 / 4e-62 AT4G08570 215 / 5e-73 Heavy metal transport/detoxification superfamily protein (.1) Lus10042946 [exp] 183 / 3e-60 AT1G71050 196 / 3e-65 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10016708 [exp] 181 / 2e-59 AT1G71050 192 / 1e-63 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10036004 [exp] 180 / 4e-59 AT1G22990 187 / 4e-62 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) Lus10019789 [exp] 174 / 1e-56 AT4G38580 254 / 4e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10014120 [exp] 174 / 1e-56 AT4G38580 253 / 5e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G087300 [exp] 246 / 3e-85 AT4G39700 215 / 9e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G079800 [exp] 234 / 3e-80 AT4G39700 189 / 2e-62 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G167000 [exp] 196 / 4e-65 AT4G08570 229 / 1e-78 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G092200 [exp] 194 / 2e-64 AT4G08570 193 / 3e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114600 [exp] 193 / 3e-64 AT1G22990 194 / 9e-65 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) Potri.005G003700 [exp] 183 / 4e-60 AT4G08570 207 / 5e-70 Heavy metal transport/detoxification superfamily protein (.1) Potri.017G123400 [exp] 170 / 3e-55 AT5G17450 220 / 4e-75 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) Potri.009G135300 [exp] 168 / 2e-54 AT4G38580 234 / 3e-80 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.004G175400 [exp] 165 / 5e-53 AT4G38580 254 / 2e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.005G110400 [exp] 150 / 6e-47 AT5G66110 189 / 2e-62 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10016436 pacid=23161907 polypeptide=Lus10016436 locus=Lus10016436.g ID=Lus10016436.BGIv1.0 annot-version=v1.0 ATGGGGATTGCAGGAACTTTGGAGTACTTGTCTGACTTGATGGCAAGCTCTGGCCATAAACACAAGAAGAGGAAGCAATTGCAGACTGTGGAGCTCAAAG TCAGGATGGATTGTGATGGTTGTGAGCTCAAGGTCAAGAATTCACTTTCTTCTCTAAGTGGGGTAAAGAGTGTGGAGATAAACAGAAAGCAACAGAAGGT GACAGTAACCGGGTTCGTCGAGCCACACAAGGTGCTGAAGAAGGCGAAATCGACAGGGAAAAGAGCAGAGATTTGGCCATACGTTCCATACAACCTGGTG GCTCAGCCATACATTGCTGGAACTTATGACAAGAAAGCACCTCCTGGCTATGTCAGGAAAGCTGAGCAAACCGGTGTTTCTAGTGGAACCTTAGTTATAA ACAGAGGAGGAGACCCTTACACCTCCATGTTCAGTGATGACAACCCTAATGCTTGCTCCGTCATGTAA
AA sequence Show only first row Show all	>Lus10016436 pacid=23161907 polypeptide=Lus10016436 locus=Lus10016436.g ID=Lus10016436.BGIv1.0 annot-version=v1.0 MGIAGTLEYLSDLMASSGHKHKKRKQLQTVELKVRMDCDGCELKVKNSLSSLSGVKSVEINRKQQKVTVTGFVEPHKVLKKAKSTGKRAEIWPYVPYNLV AQPYIAGTYDKKAPPGYVRKAEQTGVSSGTLVINRGGDPYTSMFSDDNPNACSVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39700			Heavy metal transport/detoxifi...		Lus10016436 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	11.9	0.8932
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	12.2	0.8766
AT5G20950			Glycosyl hydrolase family prot...		Lus10001151 [exp]	17.4	0.8749
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006839 [exp]	23.0	0.8718
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10030359 [exp]	24.7	0.7774
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	32.6	0.8707
AT1G06980			unknown protein		Lus10026407 [exp]	32.6	0.8672
AT1G06980			unknown protein		Lus10042244 [exp]	33.1	0.8696
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	33.6	0.8687
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	34.0	0.8539

Compare expression of checked genes

Lus10016436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.