Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06920 51 / 8e-07 FLA21 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019675 [exp] 674 / 0 AT5G06920 71 / 4e-13 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10020296 [exp] 47 / 2e-05 AT5G06920 192 / 2e-57 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10039717 [exp] 45 / 7e-05 AT5G06920 192 / 5e-58 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079500 [exp] 453 / 1e-157 AT5G06920 63 / 1e-10 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Potri.008G128200 [exp] 57 / 7e-09 AT5G40940 174 / 7e-51 putative fasciclin-like arabinogalactan protein 20 (.1) Potri.013G152200 [exp] 46 / 3e-05 AT5G06920 296 / 1e-98 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Potri.017G111600 [exp] 46 / 3e-05 AT5G40940 216 / 2e-66 putative fasciclin-like arabinogalactan protein 20 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016437 pacid=23161815 polypeptide=Lus10016437 locus=Lus10016437.g ID=Lus10016437.BGIv1.0 annot-version=v1.0 ATGGCGATTTCTCAGATCACCACTGCGGCTCTACTGATCCTGATCCTGTGGCTGACAGATCCCACCGTTGGCTTCGAGCAGCAGCCGGCCTCCACCTCAG CCGGGTCTTCGAACACTCTCTACCAGCAGTTCCCGCCGGAGCGGCTTCCTTTCCCGGCGCCCCCGATGCCTCCGAGCTCGACTCAGCCGCAGCAGCAGCA GAAGAGTGTCGCTGTCGATTCTGCCGACCGATCGTTCATCCACACAGCTCTCCTCGCTCCGATCCTTTCTCACCTCGGCTACAACGAGCTTGCCATGGCG GTCCCGTCTCTCTCGTCCGAATCCACCGCTACCGCATGGTCAGGTCCTTCAACTCTGTTCGCTCCTTCTGACGCATCTCTCCATTCTTGCTATTCTTGCT CTGTTCCTAGTCTTCTCCGGGAGCACATAGTCCCAGGCCTGTTCACAATCGATTATCTCCGTAAGCTAGCCTTCGGGACGAAGGTCGAGACTCTGTCTCC CGGCCGATGCGTCACTGTCACCTCCAGTACGATCAAGAACTCCACCGCCTCGTCTAATAATGCTTCCAAGATCTTCGTCGGAGGCGTGGAGATCACTCAT CCAGATCTCTTCAACAACGGCTTCCTTGTGATTCATGGAATCCAAGGCTACATCGCTCCTCTCTCGCCGTTCTCCTGCGACGTTGAGCGTCTCAGTTCGC TGATGTTCCCGTTCCAGCAGCCGTCCGATCGCGTCAACCAGATCACTTCGCCGCTCGTCCAGCCGGCCGTTATGCGCCTGATGATGCGAGACGCTATTCT CCGACTCCGCAACAACGGATTCAGCATCCTCGCTCTGGCAATGCGAGTCAAGTATCCGGAGCTGGTGTCCCTCAACAACATGACGATCTTCGCTCTCGAC GACTTCTCGATCTTCTCCGGATCGTACTCGTACGTCAGCAGCGTCCGATTCCACATCGTTCCTAACCAGCTATTGAGCTTCGTCGATCTCGAGAGGCTTC CGGTTGGCTGCCAATTGCCGACTCTGGAAACCGGTCAGTATCTTGTCGTGACCACCGCCGGTACCGGTACCGGTACCTCGTCTCCACCAGCGCCGATGAG GATCAACTACGTCAGGATCAAACTTCCAGACGTCATCCGTAACTTGAAGATCGCAGTCCACGGCGTCTACCTTCCCTTCCCCAGGATCCAACCGACTGCC GTCGCCTCTGCTCACAGCTTTGACCATGGCATGTGGGGAGGCGCTGACCAATCACAGGTGGACCCTGCTTCCGCCTGTGCTGCTCTATCCGAAGACGGAA GCTGCGCTATGGTCCCTGTTCCTCCAGTGAAGGCAAATCTGGAGATGGAAGATCACCATGGCCTCTAG
AA sequence Show only first row Show all	>Lus10016437 pacid=23161815 polypeptide=Lus10016437 locus=Lus10016437.g ID=Lus10016437.BGIv1.0 annot-version=v1.0 MAISQITTAALLILILWLTDPTVGFEQQPASTSAGSSNTLYQQFPPERLPFPAPPMPPSSTQPQQQQKSVAVDSADRSFIHTALLAPILSHLGYNELAMA VPSLSSESTATAWSGPSTLFAPSDASLHSCYSCSVPSLLREHIVPGLFTIDYLRKLAFGTKVETLSPGRCVTVTSSTIKNSTASSNNASKIFVGGVEITH PDLFNNGFLVIHGIQGYIAPLSPFSCDVERLSSLMFPFQQPSDRVNQITSPLVQPAVMRLMMRDAILRLRNNGFSILALAMRVKYPELVSLNNMTIFALD DFSIFSGSYSYVSSVRFHIVPNQLLSFVDLERLPVGCQLPTLETGQYLVVTTAGTGTGTSSPPAPMRINYVRIKLPDVIRNLKIAVHGVYLPFPRIQPTA VASAHSFDHGMWGGADQSQVDPASACAALSEDGSCAMVPVPPVKANLEMEDHHGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	0	1
					Lus10018446 [exp]	2.0	0.8391
AT5G49180			Plant invertase/pectin methyle...		Lus10003968 [exp]	2.8	0.8329
					Lus10001825 [exp]	5.6	0.8578
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	9.3	0.8332
AT5G50170			C2 calcium/lipid-binding and G...		Lus10037679 [exp]	9.6	0.7300
AT4G37110			Zinc-finger domain of monoamin...		Lus10021004 [exp]	10.1	0.7623
					Lus10015336 [exp]	12.0	0.8106
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10041709 [exp]	12.5	0.6761
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10010458 [exp]	13.6	0.7200
AT1G32730			unknown protein		Lus10011037 [exp]	14.0	0.7174

Compare expression of checked genes

Lus10016437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.