Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78960 300 / 2e-97 ATLUP2 lupeol synthase 2 (.1) AT1G78955 297 / 3e-96 CAMS1 camelliol C synthase 1 (.1) AT1G78950 297 / 3e-96 ATLUP3 Terpenoid cyclases family protein (.1) AT1G78970 286 / 4e-92 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G66960 284 / 2e-91 ATLUP5 Terpenoid cyclases family protein (.1) AT5G48010 247 / 3e-77 AtTHAS1, THAS1, THAS, ATPEN4 Arabidopsis thaliana thalianol synthase 1, thalianol synthase 1 (.1.2) AT1G78500 245 / 2e-76 ATPEN6 Terpenoid cyclases family protein (.1) AT4G15340 243 / 8e-76 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1) AT4G15370 236 / 4e-73 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1) AT5G36150 235 / 1e-72 ATPEN3 putative pentacyclic triterpene synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013546 [exp] 406 / 2e-138 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 400 / 1e-136 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10016440 [exp] 323 / 1e-107 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1) Lus10019674 [exp] 311 / 8e-106 AT1G78960 577 / 0.0 lupeol synthase 2 (.1) Lus10019673 [exp] 299 / 3e-102 AT1G78955 395 / 6e-133 camelliol C synthase 1 (.1) Lus10016439 [exp] 282 / 9e-92 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10016442 [exp] 249 / 2e-83 AT1G78955 283 / 5e-90 camelliol C synthase 1 (.1) Lus10026079 [exp] 260 / 2e-82 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10033355 [exp] 239 / 3e-74 AT1G78960 998 / 0.0 lupeol synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002400 [exp] 343 / 8e-114 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 338 / 3e-112 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 311 / 1e-101 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.019G079200 [exp] 264 / 2e-87 AT1G78955 548 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 265 / 6e-84 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G001500 [exp] 257 / 6e-81 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 254 / 8e-80 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 246 / 5e-77 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.018G148800 [exp] 246 / 1e-76 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.006G079300 [exp] 233 / 4e-72 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10016438 pacid=23161866 polypeptide=Lus10016438 locus=Lus10016438.g ID=Lus10016438.BGIv1.0 annot-version=v1.0 ATGAATGAGGAGGAGATGGGAGATGTTTTAAGGAAAGGACATGATTTCGTGAAAAGTTCCCAGGTGAAGGATGACCCTCAGGGTGACTTCAAGAGCATGT ACAGACACATCTCCAAAGGATCCTGGACTTTCTCGGATCAAGATCATGGATGGCAAGTCTCTGACTGCACCGCTGAAGGTCTCAAATGTTGCCTTCTTCT CTCAAAGATGTCGCCTCAACTGGTTGGCGAGCCCATGGAACCAGCTCACTTGTTTGACTCTAGTAAAAATGGAGGCTTCTCAGCTTGGGAACCTGCTGGA GCTCCAGAATGGTTAGAGGTTTTGAACTCAATAGATTTCTTCGAAGACACGATTGTCGAGCACAAGTATGTTGAATGTACAGGAGCTTCAATTACTGCAA TGGTTGAGTTCCAGAAGCTCTACCCAGGGCACAGGAGCAAAGAGATTGGCAGGTTCGTGAAAGGCGCAGTAGGATATATAGAAGCCACACAAACTCGTGA AGGAGGATGGTATGGAAACTGGGGAGTTTGCACTTGGAGAGATGTCCCTCTCGAAGGCAATCGATCCAATTTAGTACAGACAGCTTGGGCTATGATGGGT TTGATTCATGGTGGGCAGATGGACAGAGATCCGACTCCGTTACACCCTGCTGCAAAATTGCTGATAAATTCTCAAACAGAAGATGGTGATTTCCCAAGCA GGAAATGA
AA sequence Show only first row Show all	>Lus10016438 pacid=23161866 polypeptide=Lus10016438 locus=Lus10016438.g ID=Lus10016438.BGIv1.0 annot-version=v1.0 MNEEEMGDVLRKGHDFVKSSQVKDDPQGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSKMSPQLVGEPMEPAHLFDSSKNGGFSAWEPAG APEWLEVLNSIDFFEDTIVEHKYVECTGASITAMVEFQKLYPGHRSKEIGRFVKGAVGYIEATQTREGGWYGNWGVCTWRDVPLEGNRSNLVQTAWAMMG LIHGGQMDRDPTPLHPAAKLLINSQTEDGDFPSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	0	1
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	1.0	0.9039
AT2G40070			unknown protein		Lus10004390 [exp]	3.0	0.7799
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	3.2	0.8791
AT2G40116			Phosphoinositide-specific phos...		Lus10009894 [exp]	3.5	0.8372
AT3G13810	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (....		Lus10004840 [exp]	3.7	0.7976
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Lus10003122 [exp]	3.9	0.8095
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	3.9	0.8544
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10033022 [exp]	4.0	0.7973
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10037941 [exp]	4.9	0.7980
AT4G30010			unknown protein		Lus10001623 [exp]	9.2	0.6939

Compare expression of checked genes

Lus10016438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.