Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78960 871 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G78950 862 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G78955 840 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G66960 831 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78970 796 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G78500 703 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT5G36150 702 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT2G07050 700 / 0 CAS1 cycloartenol synthase 1 (.1) AT4G15370 696 / 0 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1) AT4G15340 693 / 0 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016441 [exp] 984 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10013546 [exp] 979 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016440 [exp] 848 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1) Lus10033355 [exp] 751 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10026079 [exp] 712 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10032146 [exp] 676 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10014538 [exp] 672 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10019674 [exp] 617 / 0 AT1G78960 577 / 0.0 lupeol synthase 2 (.1) Lus10025684 [exp] 599 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G002500 [exp] 949 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.014G002400 [exp] 948 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 826 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 820 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G001500 [exp] 808 / 0 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.014G002500 [exp] 779 / 0 AT1G78955 909 / 0.0 camelliol C synthase 1 (.1) Potri.018G148800 [exp] 706 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.011G085000 [exp] 704 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.006G079300 [exp] 694 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.004G132500 [exp] 692 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10016439 pacid=23161799 polypeptide=Lus10016439 locus=Lus10016439.g ID=Lus10016439.BGIv1.0 annot-version=v1.0 ATGGATAATAACACGATCCCACCGGTGAGAATCGAAGAAGACGAAGAAGAAGAAGAAGAAATCTCGTACGACGAGGCGAAGATTGCAGTGAAGAGAGGAG CTCACTTCTTCTCAGCACTTCAATCCAGCGATGGACACTGGCCAGCAGAAAACTCAGGCCCTCTTTTCTTCCTCCCACCTCTGGTCATCTGTCTGTACAT CACCGGCAATCTTACCACCGTCCTCTCAGACGAACATCGCAAGGAGATCCTCCACTACATCTACAATCATCAGAATGACGATGGTGGCTGGGGATTACAA ATCGAAGGACGGAGCACCATGTTTTGTACGACACTTAGTTACGTTTGTATGCGGATTCTAGGGGAAGGACCTGATGGTGGAAGAGACAACGCCTGTGAGA GAGCTAGGAATTGGATTCTTGATCATGGCGGGGTTACTTTTATTCCTTCTTGGGGGAAGATCTGGCTTTCGATCTTTGGAGTGTATGATTGGTCAGGGAC CAATCCAATGCCACCAGAGTTTTGGCTGCTTCCGTCATTTCTCCCTATGAACCCGGGGAAAATGTGGTGTTACTGTCGCTTGGTTTACATGCCAATGTCC TATCTTTACGGGAAAAGATTCATCGGCACTATCACTCCACTGGTTCTGCAGTTGAGGCAAGAACTTCATACTCAGCCTTACAGCCAGATCAACTGGAGGA TGACGAGACACCTTTGTTGCCGAGAAGATCTCTACTATCCTCATCCTCTGATCCAGGACTTAATCTGGGATGGTTTGTCTATGCTGGTAGAGCCTCTACT AACTCGTTGGCCTCTCAACAAGCTCATAAGGGCAAAGGCTCTTGAAGTGACAATGAAGCACATCTATTACGAAGATGAATGTAGTCGCTACATTACCATT GGATGTGTAGAAAAGGTTTTGTGTATGTTAGCATGTTGGGTAGAAGACCCCAATGGCGATTCTTTCCAGAAGCATCTCGCTAGGATTCCTGACTATCTCT GGGTTGCGGAGGATGGAATGAAGATGCAAAGTTTTGGAAGTCAGCAATGGGACACTGGCTTCTCTATCCAGGCATTGATAGCTTGCAGGATGAGCGATGA GGAGACCGGAGATGTTTTAAGGAAAGGACATGATTTCGTGAAAAGTTCCCAGGTGAAGGATGACCCTCTGGGTGACTTCAAAAGCATGTACAGGCACATC TCCAAGGGATCCTGGACTTTCTCGGACCAAGACCATGGATGGCAAGTCTCAGACTGCACCGCTGAAGGTCTCAAGTGTTGCCTTCTGCTCTCGAAGATGT CGCCTCATCTGGTTGGCGAGCCCGTGGAACCGACTCGTAAAAATGGAGGCTTGTCAGGTTGGGAGCCTGCTGGAGCTCCAGAATGGTTAGAGGAGCTATA TCCAGAGCACAGGAGGAAAGAGATTGAAAGATTCATCGAAAGTGCCGTAGGATATCTCGAAGCGGTACAAACTGATGAAGGAGGATGGTATGGAGAGTGG GGAATTTGCTTCACTTATGGAACTTGGTTTGCACTTAGAGGCCTAGCAGCCATCGGAAAAAGCTATAACAACTCCTCCTCAGTTCGTCGAGGCGTTGATT TCCTGCTATCGATACAACAAAGTGATGGCGGGTGGGGAGAGAGCTACCTTTCTTGCCCTCAGAAGAGATATGTCCCTCTTGAAGGCAACCGATCGAATCT GGTACAGACAGCTTGGGCTATGGTGGGTCTGATTCATGGAGGGCAGATGGATAGAGATCAGAGTCCAGTACACCGTGCTGCGAAAAGCAACAATAAATTA TACGAACTGTTGCAAAACAATCAAACGAGTACAAAGAGAAATTAA
AA sequence Show only first row Show all	>Lus10016439 pacid=23161799 polypeptide=Lus10016439 locus=Lus10016439.g ID=Lus10016439.BGIv1.0 annot-version=v1.0 MDNNTIPPVRIEEDEEEEEEISYDEAKIAVKRGAHFFSALQSSDGHWPAENSGPLFFLPPLVICLYITGNLTTVLSDEHRKEILHYIYNHQNDDGGWGLQ IEGRSTMFCTTLSYVCMRILGEGPDGGRDNACERARNWILDHGGVTFIPSWGKIWLSIFGVYDWSGTNPMPPEFWLLPSFLPMNPGKMWCYCRLVYMPMS YLYGKRFIGTITPLVLQLRQELHTQPYSQINWRMTRHLCCREDLYYPHPLIQDLIWDGLSMLVEPLLTRWPLNKLIRAKALEVTMKHIYYEDECSRYITI GCVEKVLCMLACWVEDPNGDSFQKHLARIPDYLWVAEDGMKMQSFGSQQWDTGFSIQALIACRMSDEETGDVLRKGHDFVKSSQVKDDPLGDFKSMYRHI SKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSKMSPHLVGEPVEPTRKNGGLSGWEPAGAPEWLEELYPEHRRKEIERFIESAVGYLEAVQTDEGGWYGEW GICFTYGTWFALRGLAAIGKSYNNSSSVRRGVDFLLSIQQSDGGWGESYLSCPQKRYVPLEGNRSNLVQTAWAMVGLIHGGQMDRDQSPVHRAAKSNNKL YELLQNNQTSTKRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	0	1
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	1.0	0.9039
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	2.0	0.9017
AT1G11340			S-locus lectin protein kinase ...		Lus10006745 [exp]	2.4	0.8676
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10033095 [exp]	4.9	0.8463
AT2G40116			Phosphoinositide-specific phos...		Lus10009894 [exp]	5.3	0.8311
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	6.7	0.8348
AT3G13810	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (....		Lus10004840 [exp]	7.7	0.7700
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10020257 [exp]	8.1	0.7935
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	8.8	0.8036
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	9.2	0.8332

Compare expression of checked genes

Lus10016439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.