Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78950 837 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G78955 823 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78960 815 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G66960 798 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78970 775 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G78500 683 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT4G15370 679 / 0 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1) AT2G07050 679 / 0 CAS1 cycloartenol synthase 1 (.1) AT5G48010 677 / 0 AtTHAS1, THAS1, THAS, ATPEN4 Arabidopsis thaliana thalianol synthase 1, thalianol synthase 1 (.1.2) AT4G15340 677 / 0 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016441 [exp] 1182 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10013546 [exp] 1031 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016439 [exp] 846 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10033355 [exp] 736 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10026079 [exp] 684 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10014538 [exp] 675 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10032146 [exp] 674 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10025684 [exp] 619 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10008544 [exp] 506 / 5e-172 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002400 [exp] 904 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 896 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 785 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 783 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G001500 [exp] 768 / 0 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 683 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.006G079300 [exp] 672 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.014G002500 [exp] 671 / 0 AT1G78955 909 / 0.0 camelliol C synthase 1 (.1) Potri.018G148800 [exp] 671 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.004G132500 [exp] 664 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10016440 pacid=23161877 polypeptide=Lus10016440 locus=Lus10016440.g ID=Lus10016440.BGIv1.0 annot-version=v1.0 ATGTGGAGGCTAAGGGTTGGAGATCGAGGCCGAGAAAACCCACAAGGCCTTTTGTTCAGCACGAATGATTTCGTGGGGAGGCAGGTTTGGGAGTTTGACG ATGAAGCTGGAACTGGTGATGAATTAGAGGAGGTCGAAGAAGTTCGGAGCAGATTCCGTACGAATCGGTTTCGGGTTAAGCCAAACTCCGACCTGCTCTG GCGTATGCAGGATTACTGGCCAGCTGAAAACGCAGGCCCTCTCTTCTTCCTCCCGCCTCTTGTCATCTGTCTGTACATCACCGGCAATCTCGCCTCCGTC CTCTCCGCCGAGCATCGCAAAGAGATTCTTCGCTACATCTACAATCATCAGAATGAAGATGGTGGTTGGGGATTACACATTGAAGGACGGAGTATAATGT TCTCCACAGCTCTCAGTTATATTTGTATGCGGATTCTGGGGGAAGGAATTGATGGTGGAAGAGATAACGCCTGCCAGAGAGCTAGGGATTGGATTCTTGA TCATGGCGGGGTTACTTGCATTCCTTCTTGGGGCAAGATCTGGCTTTCGATCTTTGGAGTGTATGATTGGTCAGGGACCAATCCAATTCCACCAGAGTTT TGGCTGCTTCCGTCATTCCTCCCTATGAACCCGGGGAAAATGTGGTGTTTCTGTCGCTTGGCTTACATGCCAATGTCATATCTTTACGGGAAAAGATTTG TCGGCACTATTACTCCACTAGTTCTGCAGTTGAGGCAAGAACTTCATACTCAGCCTTACAGTCAAATCAACTGGAGGATGACGAGACACTTTTGTTGCCA AGAAGATCTCTACTATCCCCATCCTCTGATCCAGGACTTAATCTGGGATGGTTTTTCTATGCTAGTAGAGCCTCTACTAACTCGTTGGCCGCTCAACAAG CTCATAAGGAAAAACGCTCTTGAAGTGACAATGAAGCACATTCATTATGAAGATGAATGTAGTCGCTACATTACTATTGGATGTGTGGAGAAGGTTCTGT GTATGTTGGCATGTTGGGTTGAAGACCCCAATGGCGATTCTTTCCAGAAGCATCTTGCTAGGATTCCCGACTATCTCTGGGTTGCGGAGGATGGAATGAA GATGCAAGCATTGATAGCTTGTGGAATGAATGAGGAGGAGATGGGAGATGTTTTAAGGAAAGGACATGATTTCGTGAAAAGTTCCCAGGTGAAGGATGAC CCTCAGGGTGACTTCAAGAGCATGTACAGACACATCTCCAAAGGATCCTGGACTTTCTCGGATCAAGATCATGGATGGCAAGTCTCTGACTGCACCGCTG AAGGTCTCAAATGTTGCCTTCTTCTCTCAAAGATGTCGCCTCAACTGGTTGGCGAGCCCATGGAACCAGCTCGTTTGTTTGACTCTGTCAACATTCTTCT TTCTCTTCAGAGTAAAAATGGAGGCTTATCAGCTTGGGAACCTGCTGGATCTCAAAAATGGTTAGAGGTTTTGAACCCGACTGAGTTCTTCGAGGACATC GTGGTGGAGCACGAGTATGTCGAATGCACATCATCAGCGATTTGTGCCATGACTGAGTTTAGGAAGTTGTATCCTGGCCACCGAGGGAAAGAGATTAACA AGTTCATCAAAGGTGCCGTGGGATTTCTTGAGGCCGCACAAACTCGTGAAGGAGGATGGTACGGAAACTGGGGAGTTTGCTTCACTTATGGAACTTGGTT CGCCCTTGGAGGGCTAGCTGCTGTCGGGAAGTCTTACAACTGCTATTTCTCTTCATTGATAATTGCAGAGATATATCCCTCTAGAAGGAAACAGGTCAAA TTTAGTACATACAGCTTGGGGTATGATGGGTCTAATTCATGGTGGCCAGGTTGGAACATCTACCCTCTGTGGGCTCTAGCAGAATACCGCAACTGCATAT TCAACCAGAAGAAGTAA
AA sequence Show only first row Show all	>Lus10016440 pacid=23161877 polypeptide=Lus10016440 locus=Lus10016440.g ID=Lus10016440.BGIv1.0 annot-version=v1.0 MWRLRVGDRGRENPQGLLFSTNDFVGRQVWEFDDEAGTGDELEEVEEVRSRFRTNRFRVKPNSDLLWRMQDYWPAENAGPLFFLPPLVICLYITGNLASV LSAEHRKEILRYIYNHQNEDGGWGLHIEGRSIMFSTALSYICMRILGEGIDGGRDNACQRARDWILDHGGVTCIPSWGKIWLSIFGVYDWSGTNPIPPEF WLLPSFLPMNPGKMWCFCRLAYMPMSYLYGKRFVGTITPLVLQLRQELHTQPYSQINWRMTRHFCCQEDLYYPHPLIQDLIWDGFSMLVEPLLTRWPLNK LIRKNALEVTMKHIHYEDECSRYITIGCVEKVLCMLACWVEDPNGDSFQKHLARIPDYLWVAEDGMKMQALIACGMNEEEMGDVLRKGHDFVKSSQVKDD PQGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSKMSPQLVGEPMEPARLFDSVNILLSLQSKNGGLSAWEPAGSQKWLEVLNPTEFFEDI VVEHEYVECTSSAICAMTEFRKLYPGHRGKEINKFIKGAVGFLEAAQTREGGWYGNWGVCFTYGTWFALGGLAAVGKSYNCYFSSLIIAEIYPSRRKQVK FSTYSLGYDGSNSWWPGWNIYPLWALAEYRNCIFNQKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016440 [exp]	0	1
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016441 [exp]	1.0	0.9935
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	2.4	0.9707
AT5G20860			Plant invertase/pectin methyle...		Lus10017665 [exp]	2.8	0.9794
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10011597 [exp]	4.2	0.9443
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	6.0	0.9272
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	8.7	0.9587
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	10.2	0.9482
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10032278 [exp]	12.4	0.9416
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	13.6	0.9413
					Lus10016101 [exp]	15.1	0.8722

Compare expression of checked genes

Lus10016440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.