Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78955 1036 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78950 1030 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G78960 1026 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G66960 982 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78970 972 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G78500 850 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT4G15370 843 / 0 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1) AT2G07050 841 / 0 CAS1 cycloartenol synthase 1 (.1) AT4G15340 836 / 0 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1) AT5G36150 834 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013546 [exp] 1258 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016440 [exp] 1182 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1) Lus10016439 [exp] 982 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10033355 [exp] 894 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10026079 [exp] 863 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10032146 [exp] 838 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10014538 [exp] 838 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10025684 [exp] 722 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10008544 [exp] 663 / 0 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002400 [exp] 1123 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 1117 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 988 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 980 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G001500 [exp] 964 / 0 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 854 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.014G002500 [exp] 847 / 0 AT1G78955 909 / 0.0 camelliol C synthase 1 (.1) Potri.006G079300 [exp] 842 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.004G132500 [exp] 838 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.018G148800 [exp] 836 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10016441 pacid=23161792 polypeptide=Lus10016441 locus=Lus10016441.g ID=Lus10016441.BGIv1.0 annot-version=v1.0 ATGTGGAGGCTAAGGGTTGGAGATCGAGGCCGAGAAAACCCGCAAGGCCTTTTGTTCAGCACGAATGATTTCGTGGGGAGGCAGGTTTGGGAATTTGACG ATGAAGCTGGATCTGGTGATGAATTAGAGGCGGTCGAAGAAGTTCGGAGCAGATTCTGTATGAATCGGTTTCGGATTAAGCCAAACTCCGATATGCTCTG GCGTATGCAGCGCTTCAAGCCAACGATGGCCACTGGCCAGCTGAAAACGCACTGGCCAGCTGAAAACGCAGGCCCTCTCTTCTTCCTCCCGCCTCTTGTC ATCTGTCTGTACATCACCGGCAATCTCGCCTCCGTCCTCTCCGCCGAGCATCGCAAAGAGATTCTTCGCTACATCTACAATCATCAGAATGAAGATGGTG GTTGGGGATTACACATTGAAGGACGGAGTATAATGTTCTCCACAGCTCTCAGTTATATTTGTATGCGGATTCTGGGGGAAGGAATTGATGGTGGAAGAGA TAACGCCTGCCAGAGAGCTAGGGATTGGATTCTTGATCATGGCGGGGTTACTTGCATTCCTTCTTGGGGCAAGATCTGGCTTTCGATCTTTGGAGTGTAT GATTGGTCAGGGACCAATCCAATGCCACCAGAGTTTTGGCTGCTTCCGTCATTTCTCCCTATGAACCCGGGGAAAATGTGGTGTTACTGTCGCTTGGTTT ACATGCCAATGTCATATCTTTACGGGAAAAGATTCGTCGGCACTATTACTCCACTAGTTCTGCAGTTGAGGCAAGAACTTCATACTCAGCCTTACAGTCA AATCAACTGGAGGATGACGAGACACCTTTGTTGCCAAGAAGATCTCTACTATCCCCATCCTCTGATCCAGGACTTAATCTGGGATGGTTTTTCTATGCTA GTAGAGCCTCTACTAACTCGTTGGCCGCTCAACAAGCTCATAAGGAAAAAGGCTCTTGAAGTGACAATGAAGCACATTCATTACGAAGATGAATGTAGTC GCTACATTACTATTGGATGTGTAGAGAAGGTTCTGTGTATGTTGGCATGTTGGGTTGAAGACCCCAATGGCGATTCTTTTCAGAAGCATCTTGCTAGGAT TCCCGACTATCTCTGGGTTGCGGAGGATGGAATGAAGATGCAAGCATTGATAGCTTGTGGAATGAATGAGGAGGAGATGGGAGATGTTTTAAGGAAAGGA CATGATTTCGTGAAAAGTTCCCAGGTGAAGGATGACCCTCAGGGTGACTTCAAGAGCATGTACAGACACATCTCCAAAGGATCCTGGACTTTCTCGGATC AAGATCATGGATGGCAAGTCTCTGACTGCACCGCTGAAGGTCTCAAATGTTGCCTTCTTCTCTCAAAGATGTCGCCTCAACTGGTTGGCGAGCCCATGGA ACCAGCTCGCTTGTTTGACTCTGTCAACATTCTTCTTTCTCTTCAGAGTAAAAATGGAGGCTTATCAGCTTGGGAACCTGCTGGATCTCAAAAATGGTTA GAGGTTTTGAACCCGACTGAGTTCTTCGAGGACATCGTGGTGGAGCACGAGTATGTCGAATGCACATCATCAGCGATTTGTGCCATGACTGAGTTTAGGA AGTTGTATCCTGGCCACCGAGGGAAAGAGATTAACAAGTTCATCAAAGGTGCCGTGGGATTTCTTGAGGCCGCACAAACTCGTGAAGGAGGATGGTACGG AAACTGGGGAGTTTGCTTCACTTATGGAACTTGGTTCGCCCTTGGAGGGCTAGCTGCTGTCGGGAAGTCTTACAACAATTCCTCTGCCATGCGGCGAGGC GTCGAGTTCCTACTAGCCACACAGCAAGGTGATGGTGGCTGGGGTGAGAGCTACCTTTCATCTCCTCAGAAGAGATATATCCCTCTAGAAGGAAACAGGT CAAATTTAGTACATACAGCTTGGGGTATGATGGGTCTAATTCATAGTGGCCAGATGGATAGAGATCCGACTCCGTTACACCGCGCTGCAAAACTGTTGAT AAATTCGCAGACAGAAGATGGTGATTTCCCACAACAGGAAATTTCTGGAGTGTTCTTGAAGAACTGCATGCTACATTATGCTACTTACAGGAACATCTAC CCTCTGTGGGCTCTAGCAGAATACCGCAACTGCATATTCAACCAGAAGAAGTAA
AA sequence Show only first row Show all	>Lus10016441 pacid=23161792 polypeptide=Lus10016441 locus=Lus10016441.g ID=Lus10016441.BGIv1.0 annot-version=v1.0 MWRLRVGDRGRENPQGLLFSTNDFVGRQVWEFDDEAGSGDELEAVEEVRSRFCMNRFRIKPNSDMLWRMQRFKPTMATGQLKTHWPAENAGPLFFLPPLV ICLYITGNLASVLSAEHRKEILRYIYNHQNEDGGWGLHIEGRSIMFSTALSYICMRILGEGIDGGRDNACQRARDWILDHGGVTCIPSWGKIWLSIFGVY DWSGTNPMPPEFWLLPSFLPMNPGKMWCYCRLVYMPMSYLYGKRFVGTITPLVLQLRQELHTQPYSQINWRMTRHLCCQEDLYYPHPLIQDLIWDGFSML VEPLLTRWPLNKLIRKKALEVTMKHIHYEDECSRYITIGCVEKVLCMLACWVEDPNGDSFQKHLARIPDYLWVAEDGMKMQALIACGMNEEEMGDVLRKG HDFVKSSQVKDDPQGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSKMSPQLVGEPMEPARLFDSVNILLSLQSKNGGLSAWEPAGSQKWL EVLNPTEFFEDIVVEHEYVECTSSAICAMTEFRKLYPGHRGKEINKFIKGAVGFLEAAQTREGGWYGNWGVCFTYGTWFALGGLAAVGKSYNNSSAMRRG VEFLLATQQGDGGWGESYLSSPQKRYIPLEGNRSNLVHTAWGMMGLIHSGQMDRDPTPLHRAAKLLINSQTEDGDFPQQEISGVFLKNCMLHYATYRNIY PLWALAEYRNCIFNQKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016441 [exp]	0	1
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016440 [exp]	1.0	0.9935
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	2.0	0.9582
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	2.4	0.9686
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10011597 [exp]	3.2	0.9550
AT5G20860			Plant invertase/pectin methyle...		Lus10017665 [exp]	4.2	0.9633
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032213 [exp]	4.9	0.8897
AT3G45070			P-loop containing nucleoside t...		Lus10033719 [exp]	11.0	0.8777
AT5G25840			Protein of unknown function (D...		Lus10011427 [exp]	12.0	0.8787
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	12.5	0.9352
					Lus10016100 [exp]	13.0	0.8808

Compare expression of checked genes

Lus10016441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.