Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78955 283 / 3e-90 CAMS1 camelliol C synthase 1 (.1) AT1G78960 270 / 2e-85 ATLUP2 lupeol synthase 2 (.1) AT1G78950 258 / 1e-80 ATLUP3 Terpenoid cyclases family protein (.1) AT1G78970 254 / 2e-79 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G66960 252 / 2e-78 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78500 236 / 2e-72 ATPEN6 Terpenoid cyclases family protein (.1) AT5G48010 229 / 1e-69 AtTHAS1, THAS1, THAS, ATPEN4 Arabidopsis thaliana thalianol synthase 1, thalianol synthase 1 (.1.2) AT2G07050 228 / 2e-69 CAS1 cycloartenol synthase 1 (.1) AT3G29255 226 / 4e-69 catalytics;intramolecular transferases (.1) AT4G15340 224 / 5e-68 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013546 [exp] 359 / 1e-119 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 322 / 2e-105 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10019673 [exp] 275 / 3e-92 AT1G78955 395 / 6e-133 camelliol C synthase 1 (.1) Lus10016438 [exp] 250 / 2e-83 AT1G78950 298 / 1e-96 Terpenoid cyclases family protein (.1) Lus10019674 [exp] 253 / 2e-82 AT1G78960 577 / 0.0 lupeol synthase 2 (.1) Lus10026079 [exp] 236 / 1e-72 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10032146 [exp] 218 / 1e-65 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10014538 [exp] 217 / 3e-65 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10033355 [exp] 206 / 2e-61 AT1G78960 998 / 0.0 lupeol synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G002500 [exp] 308 / 7e-100 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.014G002400 [exp] 302 / 1e-97 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 283 / 3e-90 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.019G079200 [exp] 232 / 2e-74 AT1G78955 548 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 236 / 2e-72 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 236 / 2e-72 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 235 / 3e-72 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G001500 [exp] 233 / 2e-71 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.004G015600 [exp] 233 / 3e-71 AT1G78960 907 / 0.0 lupeol synthase 2 (.1) Potri.018G148800 [exp] 229 / 6e-70 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016442 pacid=23161884 polypeptide=Lus10016442 locus=Lus10016442.g ID=Lus10016442.BGIv1.0 annot-version=v1.0 ATGCCACCTCAACTGGTTGGCAAGCCCATGGAACCGACTCGGTTGTTTGACTCTGTGAACATGCTTCTTTCTCTTCAGAGTAAAAACGGTGGCTTATCAG CTTGGGAACCTGCTGGAGCTCCAGAATGCCTTCTTCTCTCGAAGATGCCACCTCAACTGGTTGGCAAGCCCATGGAACCGACTCGGTTGTTTGTTTCTGT GACAATGTATTTTTTTCTTTTCGCAAAAAAACATAGTCTTCAGAGTAAAAACGGTGGCTTATCAGCTTGGGAACCTGCTGGAGCTCCAGAATGGTTAGAG GTATTGAACCCAGCAGACTTCTTCGAAGACACTGTCGTCGAGCACAAGTACGTTGAATGTACAGGAGCTGCCATTTCTGCAATGGTCGAGTTCAAGAACC TCTACCCAGAGCACACGATGAAAGAGATTGACACGTCCATCGAAAGGTGCGGTGGGATATATAGAAGCCAAAAAAGTCGTGATGGAGGATGGTATGGAAA CTGGGGAGTTTGCTTCAGTTATGGAACTTGTGATGGCGGGTGGGGAGAGAGCTACAATTCATGCCCTCAGAAGAGGTATGTCCCTCTCGAAGGCAATCGT CCGAATTTAGTACAGACTGCATGGGGAATGATGGGTCTGATTCATGGAGGGCAGATGGATAGAGATCAGAGTCCAGTACACCGTGCTGCGAAATTGCTGA TAAATTCTCAAACAGAAGATGGTGATTTCCCACAGCAGGAAATTACTGGAGCTTTCATGAAGAACTGCATGGTGATGTTACATTATGCTGCTTACATAAA CATCTTCCATTATGGGCTCTAG
AA sequence Show only first row Show all	>Lus10016442 pacid=23161884 polypeptide=Lus10016442 locus=Lus10016442.g ID=Lus10016442.BGIv1.0 annot-version=v1.0 MPPQLVGKPMEPTRLFDSVNMLLSLQSKNGGLSAWEPAGAPECLLLSKMPPQLVGKPMEPTRLFVSVTMYFFLFAKKHSLQSKNGGLSAWEPAGAPEWLE VLNPADFFEDTVVEHKYVECTGAAISAMVEFKNLYPEHTMKEIDTSIERCGGIYRSQKSRDGGWYGNWGVCFSYGTCDGGWGESYNSCPQKRYVPLEGNR PNLVQTAWGMMGLIHGGQMDRDQSPVHRAAKLLINSQTEDGDFPQQEITGAFMKNCMVMLHYAAYINIFHYGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016442 [exp]	0	1
					Lus10037540 [exp]	1.0	0.9368
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032213 [exp]	4.9	0.8756
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	5.7	0.8910
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	6.2	0.8778
AT1G48120			hydrolases;protein serine/thre...		Lus10042411 [exp]	9.2	0.7550
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10008861 [exp]	12.0	0.8650
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003897 [exp]	14.8	0.7682
AT3G52740			unknown protein		Lus10014197 [exp]	16.2	0.8595
AT3G54510			Early-responsive to dehydratio...		Lus10043455 [exp]	18.4	0.7911
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	20.2	0.8642

Compare expression of checked genes

Lus10016442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.