Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14740 297 / 8e-101 BETACA2, CA18, CA2 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) AT3G01500 281 / 3e-94 SABP3, ATBCA1, CA1, ATSABP3 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) AT1G70410 250 / 2e-82 ATBCA4 beta carbonic anhydrase 4 (.1.2.3) AT1G23730 235 / 2e-76 ATBCA3 BETA CARBONIC ANHYDRASE 3, beta carbonic anhydrase 3 (.1) AT4G33580 174 / 3e-52 ATBCA5 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) AT1G58180 169 / 5e-51 ATBCA6 A. THALIANA BETA CARBONIC ANHYDRASE 6, beta carbonic anhydrase 6 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022235 [exp] 342 / 5e-117 AT3G01500 460 / 3e-163 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10008780 [exp] 266 / 5e-87 AT3G01500 357 / 1e-122 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10030614 [exp] 254 / 1e-83 AT1G70410 351 / 6e-123 beta carbonic anhydrase 4 (.1.2.3) Lus10030874 [exp] 234 / 4e-76 AT5G14740 319 / 8e-111 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10015833 [exp] 200 / 2e-61 AT4G33580 306 / 2e-103 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10020415 [exp] 199 / 3e-59 AT1G15820 379 / 9e-130 light harvesting complex photosystem II subunit 6 (.1) Lus10009274 [exp] 162 / 1e-47 AT4G33580 281 / 2e-94 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10015892 [exp] 112 / 5e-29 AT4G33580 205 / 3e-65 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10013545 [exp] 89 / 1e-21 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348900 [exp] 290 / 1e-96 AT3G01500 429 / 2e-151 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Potri.010G041100 [exp] 270 / 7e-90 AT5G14740 392 / 4e-138 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.008G189800 [exp] 261 / 2e-86 AT5G14740 375 / 5e-133 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G075902 [exp] 241 / 8e-79 AT5G14740 304 / 1e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G076000 [exp] 239 / 7e-78 AT5G14740 303 / 4e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.017G044700 [exp] 201 / 2e-62 AT4G33580 339 / 8e-117 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.007G114600 [exp] 196 / 2e-60 AT4G33580 335 / 4e-115 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.005G156600 [exp] 184 / 5e-56 AT4G33580 303 / 1e-102 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00484 [flax] [poplar] Pro_CA Carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10016443 pacid=23161808 polypeptide=Lus10016443 locus=Lus10016443.g ID=Lus10016443.BGIv1.0 annot-version=v1.0 ATGGGCGCCCCTGTTTTTGTGCTTCCATTCGGTTCCCGGCCGACAACGTTGGGCGACCCTATTTTTCCTGCTATTCCATTTGAAATAACCGCTGGCTGTT CGGCGATGACGACGGACGCTCTCCCTTCCTTTGTCCAGCGCTTCCTCTCCAAGTTTGAAAGAGGCTTACCTCCAAATATGATTCTATCTTCTTCTTCTTC TTCTTCTAACAATGATACTACAGCTCTTCCCAGAACCCAGCTGCCCGTTTTCGCTGCCCCTGTTCCTCCTCTTTTCCCTACCTCTGCCCCTCATCTTTTC TCAGTTGCCCCGAAGGTGGACGACCAGATCACAGCAGAGCTCACAGCAACAAACCCCTTTGATGCTGTCCAGCGTATTAAAGATGGCTTCAACACTGTCA AGCTCCAGAAATACCAGAAGAACCCGCAACTGTACAGAGAGCTAGCCAAAGGGCAGAGCCCCAAGGTTGTACATGTGGTTGCCTGTTCGGATTCAAGGGT GTGTCCTTCACACGTTCTGGATTTCCAGCCCGGAGAGGCTTACGTCGTCCGTAACATTGCCAACTTGGTCCCCGAATTCGACCCGACGAAGCAAGTAGGG GTAGGGGCCGCGCTGGAGTTCGCGGTGCTCCATCTCAAGGTGGAGAACATAGTGGTGATTGGCCACAGTTCCTGCGCCGGCATCAAGGGCCTCATGTCTT ACCCCTACGATGACGAGACCCGCAACTCGATTTCCGGTGACTACTTCATAGAGGAATGGATGAAGATTGGACTCCCAGCAAAGATGAAGGTGCTAGCTGA GAATCCCAGTGCTGCATTTCGAGACCAATGCACCATCTGTGAGAAGGAGGCAGTGAATGTGTCGCTGGCGAATCTGCAGACGTATCCATTTGTGAAGGAT CGGGTTTGCAGCGAGACGCTGAAGCTGTACGGAGGTTACTATGATTTCGTCAACGGAGGGTTTGAGGTGTGGAGACTTTTATATGTAATTTGA
AA sequence Show only first row Show all	>Lus10016443 pacid=23161808 polypeptide=Lus10016443 locus=Lus10016443.g ID=Lus10016443.BGIv1.0 annot-version=v1.0 MGAPVFVLPFGSRPTTLGDPIFPAIPFEITAGCSAMTTDALPSFVQRFLSKFERGLPPNMILSSSSSSSNNDTTALPRTQLPVFAAPVPPLFPTSAPHLF SVAPKVDDQITAELTATNPFDAVQRIKDGFNTVKLQKYQKNPQLYRELAKGQSPKVVHVVACSDSRVCPSHVLDFQPGEAYVVRNIANLVPEFDPTKQVG VGAALEFAVLHLKVENIVVIGHSSCAGIKGLMSYPYDDETRNSISGDYFIEEWMKIGLPAKMKVLAENPSAAFRDQCTICEKEAVNVSLANLQTYPFVKD RVCSETLKLYGGYYDFVNGGFEVWRLLYVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Lus10016443 [exp]	0	1
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Lus10040894 [exp]	6.2	0.7795
AT1G18880		NRT1.9	nitrate transporter 1.9, Major...		Lus10015351 [exp]	9.6	0.7383
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	24.5	0.7690
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	28.9	0.7720
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	33.3	0.7528
AT1G55760			BTB/POZ domain-containing prot...		Lus10008348 [exp]	48.9	0.7265
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032750 [exp]	49.0	0.7270
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10034997 [exp]	55.4	0.7489
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	56.6	0.7416
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	60.8	0.6769

Compare expression of checked genes

Lus10016443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.