Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58960 581 / 0 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G45260 219 / 3e-65 Plant protein of unknown function (DUF641) (.1) AT3G14870 155 / 3e-41 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G29300 154 / 9e-41 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT1G53380 145 / 9e-38 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G60680 139 / 2e-35 Plant protein of unknown function (DUF641) (.1) AT4G34080 100 / 2e-23 Plant protein of unknown function (DUF641) (.1) AT2G30380 89 / 1e-18 Plant protein of unknown function (DUF641) (.1) AT4G33320 87 / 1e-18 Plant protein of unknown function (DUF641) (.1) AT5G12900 66 / 4e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040707 [exp] 450 / 5e-155 AT5G58960 255 / 3e-84 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10040708 [exp] 290 / 4e-96 AT5G58960 252 / 3e-83 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10030291 [exp] 226 / 1e-67 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 224 / 4e-67 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 164 / 1e-44 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10024190 [exp] 163 / 4e-44 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 154 / 8e-41 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 151 / 9e-40 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1) Lus10015232 [exp] 150 / 1e-39 AT1G29300 377 / 7e-128 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041000 [exp] 630 / 0 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145900 [exp] 229 / 5e-69 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.013G155400 [exp] 169 / 3e-46 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 160 / 1e-42 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.011G108000 [exp] 149 / 4e-39 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.011G071000 [exp] 147 / 2e-38 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 147 / 3e-38 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.004G061600 [exp] 142 / 2e-36 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.001G387700 [exp] 139 / 2e-35 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.014G067600 [exp] 124 / 3e-31 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [flax] [poplar] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Lus10016444 pacid=23144854 polypeptide=Lus10016444 locus=Lus10016444.g ID=Lus10016444.BGIv1.0 annot-version=v1.0 ATGTTTCCTGGGATCTTCCTCTGTTCCCTCAGCTCAGACTGTAAAAGGAAGAAGCAGAAGGGCAGCGGCGCTGTACTGGACGACGACGACGACTTCAACT CTTCAAATTACTCCCTCCAGTTCGACAGAGATCCAGCCAGATTCTCTCTCCGGTCCTACAACCTTCATTGCAGGAACAGAGAAGACGTCAAGGTAACGAA CAAGAAGCGAGAAATGGGTACCAAGGTGTCCAATTTCTCCGACCTGATTCAACGAGTAGCCGCTTCTTGCTTGCTCCACCCTCTCGCCGGCGTTAAGCAT GATCAGTCATTGACTAACGGATCCGGCAGCGAGGAAGAGGATGTTTACCAGTATGAAACAGATGACGGCGAAGAAGAAGTGGAAGAGGAAGAGGAAGAAA CTGAGGAAGAGGAGACAGAGGAGGAAGTAGAGGAACTGGAGAGCAGGAAGAACGGGGAAATTAGGGCTTGGAAGCAAGGTGGGAGGAAGAAGAACCAGCA GCGGAGCGAGTCGGATATGGTTCCGATTGATCGTGTAATGGAGGTGGAGATGCTGGTCAACGAGGTTTTCGACTGCGTCTCGGCGATGAAGAGGGCGTAC GTCACCTTGCAAGAGGCGCATTGCCCGTGGGATCCGGATCGGATGCGGGTCGCTGACGTGGCGGTGGTCGGAGAGTTGAGGAATTTGGGTGTTTTGAGGG AGAGGTTTAGGAGGTGCGTCAAAGTTGGCGGGGGAGGAGGACGGAGGAAGAGAGGCGGCGGATGCGGAGTTGGGATGCTCAGAGAGGCGGTGGCGCCGTA TGAGGCGGCGGTGGATGAGCTGAAGAAGGAAGTGAAGGCGAAGCAGGCGGAGGTTGAGAATCTGAAGGAGAAGCTTAAGGCCGCCACGTGTACCGGTAAA GGAGGGAAGAAGAAAGGGTGGTCGTCGCAGTCGAAGCGCAAAGTCAGCTGTAGTCATGGCTCCCAAGCCTCCGTCGTTGTTGATACAGTGGCGATGTCTC CGGCGCCGGAGCTGTTCGAGGGAACGATGAGTCAGGTGAAGGAGACGTCCAAGGCATTCACATCCATCCTCCTATCGCTGATGCGAGCAGCGCAGTGGGA CATCCCGGCGGCCGTCCGATCAATCGAGGCCGCCGCCGCGAACACAGACGGCAACGTCACCACGATCAATACGATCGCCTCCACGGCGGCGACGCACCAC GCGAAGTACGCGCTGGAATCCTACATATCCAGGAAGATCTTCCAAGGATTCGACCACGAGACGTTCTACATGGACGGAAGCCTATCGTCGCTGCTCAACC CTGACCAATTTCGCCGCGACTGCTTCGCTCAGTACCGTGACATGAAAGCCATGGACCCAGTGGAGCTGCTAGGGATCCTGCCGACTTGCCATTTCGGGAA ATTCTGCAACAAGAAGTACCTGGCGATCGTGCACCCGAAGATGGAGGAATCCTTGTTCGGTAACTTGGAGCAGCGGCAGCAGGTGGTGGCGGGAAGTCAT CCGAGGAGTCAATTCTACGCCGAGTTTTTAGGATTGGCTAAGGCGATTTGGTTGCTTCATCTGCTGGCGTTCTCTCTGGATCCAGCGCCGAGTCAGTTTG AAGCGAGCAGAGGAGCGGAGTTCCATGCTCTGTACATGGAAAGTGTGGTGAAGTTTTCTGGAGGTAGGATTCCTGCTGGTCAGGTCGTTGGTTTCCCCGT TTGCCCTGGGTTTAAGCTTGGAAATGGATCAATTATCAAGGCTAGGGTTTATCTTGTTCCCAGAACATAA
AA sequence Show only first row Show all	>Lus10016444 pacid=23144854 polypeptide=Lus10016444 locus=Lus10016444.g ID=Lus10016444.BGIv1.0 annot-version=v1.0 MFPGIFLCSLSSDCKRKKQKGSGAVLDDDDDFNSSNYSLQFDRDPARFSLRSYNLHCRNREDVKVTNKKREMGTKVSNFSDLIQRVAASCLLHPLAGVKH DQSLTNGSGSEEEDVYQYETDDGEEEVEEEEEETEEEETEEEVEELESRKNGEIRAWKQGGRKKNQQRSESDMVPIDRVMEVEMLVNEVFDCVSAMKRAY VTLQEAHCPWDPDRMRVADVAVVGELRNLGVLRERFRRCVKVGGGGGRRKRGGGCGVGMLREAVAPYEAAVDELKKEVKAKQAEVENLKEKLKAATCTGK GGKKKGWSSQSKRKVSCSHGSQASVVVDTVAMSPAPELFEGTMSQVKETSKAFTSILLSLMRAAQWDIPAAVRSIEAAAANTDGNVTTINTIASTAATHH AKYALESYISRKIFQGFDHETFYMDGSLSSLLNPDQFRRDCFAQYRDMKAMDPVELLGILPTCHFGKFCNKKYLAIVHPKMEESLFGNLEQRQQVVAGSH PRSQFYAEFLGLAKAIWLLHLLAFSLDPAPSQFEASRGAEFHALYMESVVKFSGGRIPAGQVVGFPVCPGFKLGNGSIIKARVYLVPRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	0	1
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	1.4	0.9347
					Lus10018215 [exp]	1.4	0.9236
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040707 [exp]	2.0	0.9023
AT5G19340			unknown protein		Lus10010529 [exp]	4.0	0.8807
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10025200 [exp]	4.9	0.8923
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	5.5	0.9035
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10015046 [exp]	5.5	0.8782
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10011565 [exp]	5.5	0.9018
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015753 [exp]	5.7	0.8740
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040708 [exp]	6.5	0.8624

Compare expression of checked genes

Lus10016444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.