Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58970 437 / 3e-155 ATUCP2 uncoupling protein 2 (.1.2) AT3G54110 379 / 3e-132 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT4G24570 171 / 5e-51 DIC2 dicarboxylate carrier 2 (.1) AT2G22500 168 / 1e-49 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT1G14140 167 / 1e-49 Mitochondrial substrate carrier family protein (.1) AT5G09470 143 / 5e-40 DIC3 dicarboxylate carrier 3 (.1) AT4G03115 129 / 5e-35 Mitochondrial substrate carrier family protein (.1) AT5G19760 121 / 4e-32 Mitochondrial substrate carrier family protein (.1) AT3G21390 83 / 8e-18 Mitochondrial substrate carrier family protein (.1) AT5G61810 80 / 8e-17 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040709 [exp] 539 / 0 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10021123 [exp] 392 / 2e-137 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10027755 [exp] 391 / 4e-137 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10035538 [exp] 389 / 3e-136 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10017187 [exp] 369 / 1e-128 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10030443 [exp] 163 / 6e-48 AT1G14140 421 / 3e-149 Mitochondrial substrate carrier family protein (.1) Lus10007883 [exp] 131 / 2e-34 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 125 / 3e-33 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1) Lus10030361 [exp] 123 / 1e-32 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G247800 [exp] 455 / 2e-162 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.006G095500 [exp] 417 / 1e-147 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.016G110100 [exp] 413 / 1e-145 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.017G045100 [exp] 176 / 8e-53 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045150 [exp] 176 / 9e-53 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 174 / 7e-52 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.005G157300 [exp] 172 / 4e-51 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.007G113000 [exp] 171 / 1e-50 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.002G104400 [exp] 168 / 9e-50 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.010G165900 [exp] 155 / 6e-45 AT1G14140 447 / 1e-159 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10016445 pacid=23144793 polypeptide=Lus10016445 locus=Lus10016445.g ID=Lus10016445.BGIv1.0 annot-version=v1.0 ATGGCAGATCTCCACCCCAAATCCGACATTTCGTTCGCTGGGGTCTTCCTCTGCAGCGCATTTGCTGCTTGTTTCGCCGAGTTCTGTACAATTTCATTAG ACACAGCGAAAGTGAGGCTTCAGCTCCAGCGCAAGGCAACCCCTGGGGATGGAGCAGGTGTACCAAAGTACCGAGGTCTGTTGGGTACCATGGTCACAAT TGCCAAGGAGGAAGGTTTATCAGCACTTTGGAAAGGTGTTACTGCTGGATTGCATCGCCAGTTCATTTACGGTGGCTTGCGGATCGGATTGTACGAACCG GTGAAATCACTTTTGGTTGGAAGTGATTCTGGTGGAGTTATCCCTTTATACCAGAAGATCCTTGCAGCTCTGATAACTGGCAAGTTTTTTTACAAACATT ATCAACAGATCAAGGCTTGGTTTGGCAAAAAGAATCATGATTCTTTGGAAAGTGGAATAGCTATAATTGTAGCGAATCCCACTGACCTTGTCAAAGTCAG ACTGCAAGCTGAAGGGAAATTACCACCTGGTGTACCTAAGCGATATGCTGGAGCTTTCGATGCTTATCTAACAATAGTGAAGCAGGAGGGACTAGCTGCA TTATGGACTGGACTTGGGCCAAACATAGCAAGAAATGCTATCATAAATGCTGCTGAGCTTGCCAGTTACGATGAAATAAAGCAGACAATTTTGCAAATTC CAGGGTTCAGGGATAATGTTTTGACTCACGTTCTAGCTGGCCTTGGTGCTGGTTTCTTTGCTGTGAGCATTGGTTCACCCATTGATGTGGTGAAATCAAG AATGATGGGAGACTCTTCCTACAAAAGCACAGTAGACTGTTTTCTCAAGACTATGAAGAACGAGGGGATTTTCGCCTTCTACAAAGGATTCCTTCCCAAT TTCGGTCGGCTTGGATCCTGGAATGTTATAATGTTCTTGACACTAGAGCAAGTGAAGAAACTATTCGTCAGAGAAGTATACTACGATTGA
AA sequence Show only first row Show all	>Lus10016445 pacid=23144793 polypeptide=Lus10016445 locus=Lus10016445.g ID=Lus10016445.BGIv1.0 annot-version=v1.0 MADLHPKSDISFAGVFLCSAFAACFAEFCTISLDTAKVRLQLQRKATPGDGAGVPKYRGLLGTMVTIAKEEGLSALWKGVTAGLHRQFIYGGLRIGLYEP VKSLLVGSDSGGVIPLYQKILAALITGKFFYKHYQQIKAWFGKKNHDSLESGIAIIVANPTDLVKVRLQAEGKLPPGVPKRYAGAFDAYLTIVKQEGLAA LWTGLGPNIARNAIINAAELASYDEIKQTILQIPGFRDNVLTHVLAGLGAGFFAVSIGSPIDVVKSRMMGDSSYKSTVDCFLKTMKNEGIFAFYKGFLPN FGRLGSWNVIMFLTLEQVKKLFVREVYYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10016445 [exp]	0	1
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	2.4	0.8919
AT5G47900			Protein of unknown function (D...		Lus10014112 [exp]	3.5	0.8833
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10040709 [exp]	3.7	0.8850
AT5G62620			Galactosyltransferase family p...		Lus10037238 [exp]	9.5	0.8579
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10031053 [exp]	10.2	0.8298
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	12.4	0.8580
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	13.7	0.8618
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	14.4	0.8570
AT1G61900			unknown protein		Lus10006773 [exp]	15.0	0.8298
AT5G47900			Protein of unknown function (D...		Lus10000090 [exp]	15.3	0.8454

Compare expression of checked genes

Lus10016445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.