Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52370 155 / 2e-49 unknown protein AT5G58990 149 / 7e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040713 [exp] 235 / 2e-80 AT5G52370 167 / 6e-54 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G040100 [exp] 167 / 7e-54 AT5G52370 150 / 4e-47 unknown protein Potri.001G246800 [exp] 163 / 5e-52 AT5G52370 160 / 2e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016449 pacid=23144843 polypeptide=Lus10016449 locus=Lus10016449.g ID=Lus10016449.BGIv1.0 annot-version=v1.0 ATGGCGACTAGTTTGGCGAACAGAGCATCTTCCACTAATCAAGTCCTATGTTTCTTCCGATGCGGTTTGAATTCAATCAGAAACTTGAGCACTTCTTCTA CTCCGGCTCCAGCTCAAGCCCCATCTTCCGACTCACCTGCCAAGAAATCGAAGCGGCGGAAGAAGAAGAACCTCTTCGAGGTTGCTCAGTTCTTGCCCAA ATGGGGACTGGGATACCACTTGGCCAAATCTCACTGGTCCAATGTCTCCTACGAGATCACCAAGATCAATCTCTACAAGGATGGTAGACACGGGAAGGCA TGGGGGCTTGCTTACAAAGACGGATTACCTGCAGCAGATGCTCCCAAGAAGATCAGCGGAGTTCATAAGCGTTGCTGGAAATATCTACCGGGCTTAGAAA AATCAAATCAGAACTTGCTAAAGTCCCCAAGTCCAACAGAGACCACTGCTCCTCAGGCTGAACAAGTTGAAGCTGCCTAA
AA sequence Show only first row Show all	>Lus10016449 pacid=23144843 polypeptide=Lus10016449 locus=Lus10016449.g ID=Lus10016449.BGIv1.0 annot-version=v1.0 MATSLANRASSTNQVLCFFRCGLNSIRNLSTSSTPAPAQAPSSDSPAKKSKRRKKKNLFEVAQFLPKWGLGYHLAKSHWSNVSYEITKINLYKDGRHGKA WGLAYKDGLPAADAPKKISGVHKRCWKYLPGLEKSNQNLLKSPSPTETTAPQAEQVEAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52370			unknown protein		Lus10016449 [exp]	0	1
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10041264 [exp]	3.5	0.9477
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	5.7	0.9490
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10038778 [exp]	6.0	0.9326
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10000165 [exp]	8.1	0.9313
AT2G03590		ATUPS1	ureide permease 1 (.1)		Lus10037074 [exp]	8.3	0.9356
AT1G60770			Tetratricopeptide repeat (TPR)...		Lus10029115 [exp]	10.0	0.9115
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	11.1	0.9350
AT3G06700			Ribosomal L29e protein family ...		Lus10016875 [exp]	12.2	0.9349
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10034179 [exp]	13.2	0.9037
AT4G18100			Ribosomal protein L32e (.1)		Lus10011970 [exp]	14.2	0.9339

Compare expression of checked genes

Lus10016449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.