Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52390 137 / 8e-39 PAR1 protein (.1) AT3G54040 134 / 1e-37 PAR1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040714 [exp] 332 / 2e-114 AT5G52390 136 / 2e-40 PAR1 protein (.1) Lus10040702 [exp] 321 / 1e-110 AT5G52390 138 / 2e-41 PAR1 protein (.1) Lus10040715 [exp] 292 / 7e-99 AT5G52390 138 / 4e-41 PAR1 protein (.1) Lus10018204 [exp] 170 / 2e-52 AT5G52390 85 / 2e-21 PAR1 protein (.1) Lus10017196 [exp] 136 / 2e-38 AT3G54040 191 / 1e-62 PAR1 protein (.1) Lus10021114 [exp] 136 / 2e-38 AT3G54040 192 / 6e-63 PAR1 protein (.1) Lus10012788 [exp] 130 / 1e-35 AT5G52390 198 / 7e-64 PAR1 protein (.1) Lus10033988 [exp] 128 / 3e-34 AT5G52390 194 / 3e-62 PAR1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G039950 [exp] 172 / 3e-52 AT3G54040 140 / 1e-42 PAR1 protein (.1) Potri.006G094300 [exp] 162 / 1e-48 AT3G54040 198 / 2e-65 PAR1 protein (.1) Potri.016G106800 [exp] 162 / 2e-48 AT3G54040 191 / 1e-62 PAR1 protein (.1) Potri.009G039900 [exp] 160 / 4e-48 AT3G54040 118 / 4e-34 PAR1 protein (.1) Potri.009G040000 [exp] 160 / 3e-47 AT5G52390 141 / 3e-42 PAR1 protein (.1) Potri.015G144800 [exp] 150 / 6e-44 AT5G52390 208 / 5e-69 PAR1 protein (.1) Potri.012G141800 [exp] 146 / 2e-42 AT5G52390 213 / 6e-71 PAR1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06521 [flax] [poplar] PAR1 PAR1 protein
Representative CDS sequence Show only first row Show all	>Lus10016450 pacid=23144842 polypeptide=Lus10016450 locus=Lus10016450.g ID=Lus10016450.BGIv1.0 annot-version=v1.0 ATGGCTACTTGTGTCTTCAGTAACATGATCACATTCGTCACTCTATCGTCTCTTCTCCTTCACGGAGTCCTCGGTGATCTGGTATGCGAGGAACTCCCAG TGGAAATGTGCGCCTACTCGATCTCCGGATTGGGGAAGAGATGCGTGATGGAGAACTACATATCACGAAATGGTGTCGTGAAGTACCAATGCGAGACATC AGAGGTAGTGGTGGACGACATGAAGGACTTGATCGAGTCGGATGAATGCATCAAGGCATGTGGCGTCGACCGAAAAACCGTGGGGATCTCCTCGGATTAC CTCCTCACACGTAAGTTCGTGTCACAGCTTTGCTCCAGGCCCTGCTTCCAGTCCTGCCCCAACATCGTCGACCTCTACTCCAACTTGGCTCTAGCTGAAG GGATGGATTTGTATGGAATGTGCAGCTGGGGTGGTCGTCGTAGGTCATTGTTGCAGCCTAAGAGTTGGAGTGATGCTGGTGCAAATGGAGGCCCGATTGG TTCACCTATATCTTCAGCAGCTGATACTGATGCTGATGCCACTGCTTTTGGTCCCTCTTCTGATGCCAGTGATCTGCTATGCGAGGAGCTCCCAGTGGAG AAGTGCGCCTACTCGATCTCCGGATCAGGGAAGAGATGCGTGATGGAGAATTACATATCTAGAAGTGGTGTGGTGAAGTACCAATGCGAGACATCTGAGG TAGTGGTGGACAACATGAAGGACATGATCGAGTCGGATGAATGCATCAAGGCATGTGGCGTTGACAGAAACACCATAGGGATCTCTTCGGATTACCTCCT CACACGTAAGTTCGTGTCACAGCTCTGTTCTGGATCCTGCTTCCAGTCCTGCCCCAACATCGTCGACCTCTACTCCAACTTGGCGCTAGCCGAAGGGATG GATTTGTATGGTATGTGCAGCTTGGCTGGTCGACGTAGGTCGTTGTTCCAGCCTAAAAGTTCGAGTGATGCTCGTGCTGCAGCAGCAGCAAATGGAGTCC CAATCAGTGTCCCGATTGGTTCTCCTATGTCTTCAGCAGCTGGTCTGGCTTCTTCGGATGATGATGTTGATGATGCCGCTGCTGCTTTTGGTCCCTCTTC TGATGCATACTGA
AA sequence Show only first row Show all	>Lus10016450 pacid=23144842 polypeptide=Lus10016450 locus=Lus10016450.g ID=Lus10016450.BGIv1.0 annot-version=v1.0 MATCVFSNMITFVTLSSLLLHGVLGDLVCEELPVEMCAYSISGLGKRCVMENYISRNGVVKYQCETSEVVVDDMKDLIESDECIKACGVDRKTVGISSDY LLTRKFVSQLCSRPCFQSCPNIVDLYSNLALAEGMDLYGMCSWGGRRRSLLQPKSWSDAGANGGPIGSPISSAADTDADATAFGPSSDASDLLCEELPVE KCAYSISGSGKRCVMENYISRSGVVKYQCETSEVVVDNMKDMIESDECIKACGVDRNTIGISSDYLLTRKFVSQLCSGSCFQSCPNIVDLYSNLALAEGM DLYGMCSLAGRRRSLFQPKSSSDARAAAAANGVPISVPIGSPMSSAAGLASSDDDVDDAAAAFGPSSDAY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52390			PAR1 protein (.1)		Lus10016450 [exp]	0	1
AT1G17960			Threonyl-tRNA synthetase (.1)		Lus10030644 [exp]	1.4	0.9760
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	2.0	0.9748
AT2G14100		CYP705A13	"cytochrome P450, family 705, ...		Lus10024582 [exp]	4.1	0.9261
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10039713 [exp]	4.2	0.9697
AT2G37240			Thioredoxin superfamily protei...		Lus10019900 [exp]	4.5	0.9207
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006244 [exp]	5.3	0.9659
					Lus10026075 [exp]	5.3	0.9069
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10001914 [exp]	6.3	0.9621
					Lus10020641 [exp]	8.5	0.9553
AT5G45650			subtilase family protein (.1)		Lus10002780 [exp]	8.9	0.9447

Compare expression of checked genes

Lus10016450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.