Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 147 / 1e-44 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 138 / 7e-41 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 126 / 2e-36 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 115 / 2e-32 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G34200 73 / 6e-16 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G45530 63 / 4e-12 RING/U-box superfamily protein (.1) AT5G60580 62 / 3e-11 RING/U-box superfamily protein (.1.2.3.4) AT5G03180 59 / 2e-10 RING/U-box superfamily protein (.1.2) AT3G09760 56 / 3e-09 RING/U-box superfamily protein (.1) AT5G08750 55 / 4e-09 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040716 [exp] 265 / 3e-91 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 144 / 3e-43 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 134 / 6e-40 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 129 / 3e-37 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 129 / 5e-37 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 127 / 7e-37 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 125 / 7e-36 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10029242 [exp] 90 / 5e-22 AT5G05830 101 / 3e-26 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 89 / 1e-21 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G039700 [exp] 187 / 1e-60 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 186 / 3e-60 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 143 / 2e-43 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 140 / 1e-41 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 140 / 1e-41 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 139 / 1e-41 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G059200 [exp] 93 / 1e-22 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 82 / 1e-18 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G149200 [exp] 65 / 1e-12 AT2G45530 236 / 3e-78 RING/U-box superfamily protein (.1) Potri.016G022900 [exp] 64 / 4e-12 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016451 pacid=23144901 polypeptide=Lus10016451 locus=Lus10016451.g ID=Lus10016451.BGIv1.0 annot-version=v1.0 ATGTCGACTTTAAGCAGTACCCAGTTGGAAAGGGAGCAGCTTCAGCATCATTTCAGCCCCAGCAGCAGTGACCTGTCGTCCTTCTTTGGGGCGAACCATA GGAACTCCACTGCCTCTGATTGCCTCTCAGATTTGGATTTGGAGAGTGGGGAGTTGGAGCTCAAGGTGCATTCTGCTGATAATAAGACTGCTCTGAGTAG TAGAGATTGCAGGATTTGCCATTTGGGTCTACTGAGTAATGAGCAGGAGTCTGGTGTGGCGATTGAGCTGGGGTGTTCCTGTAAAGGGGATCTGGCTGCT GCTCATAAGAAGTGCGCAGAGACTTGGTTCAAGATCAAAGGCAACATGGTATGTGAGATCTGTGGTAGTACAGCAGCCAACGTTGCAGGAGAGCAAACAA ATGTGGCTTTCAATGCAAATGCAGCAGCAGCCATAGCTACACCGGCAGCTCCGATGATTCTTGTGGAAGCTAGACCGGCATGGCACAGCCGCCGAATCAT GAATTTCTTGCTTGCTTGCATGGTTCTTGCCTTTGTTGTTTCCTGGCTATTTCACTTCAAAGTTCTTCCCTAA
AA sequence Show only first row Show all	>Lus10016451 pacid=23144901 polypeptide=Lus10016451 locus=Lus10016451.g ID=Lus10016451.BGIv1.0 annot-version=v1.0 MSTLSSTQLEREQLQHHFSPSSSDLSSFFGANHRNSTASDCLSDLDLESGELELKVHSADNKTALSSRDCRICHLGLLSNEQESGVAIELGCSCKGDLAA AHKKCAETWFKIKGNMVCEICGSTAANVAGEQTNVAFNANAAAAIATPAAPMILVEARPAWHSRRIMNFLLACMVLAFVVSWLFHFKVLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	0	1
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10040716 [exp]	1.0	0.9330
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10000486 [exp]	2.8	0.8198
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10023147 [exp]	7.5	0.7092
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	7.7	0.8111
AT5G17510			unknown protein		Lus10024979 [exp]	10.5	0.7597
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	12.6	0.7718
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	14.5	0.7713
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10026638 [exp]	15.1	0.8042
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10023159 [exp]	15.7	0.7624
AT4G40045			unknown protein		Lus10034155 [exp]	16.0	0.7646

Compare expression of checked genes

Lus10016451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.