Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59010 775 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 707 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G63500 687 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 686 / 0 BSK3 BR-signaling kinase 3 (.1) AT5G41260 675 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G35230 615 / 0 BSK1 BR-signaling kinase 1 (.1) AT1G01740 578 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT5G46570 570 / 0 BSK2 BR-signaling kinase 2 (.1) AT3G09240 565 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 560 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040719 [exp] 944 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10027743 [exp] 746 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 739 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008530 [exp] 695 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 695 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 691 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10030383 [exp] 644 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10037856 [exp] 642 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10018849 [exp] 635 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G246400 [exp] 832 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 816 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.006G093900 [exp] 763 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 754 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.002G158400 [exp] 696 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.001G104700 [exp] 691 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.014G082400 [exp] 691 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.003G126700 [exp] 687 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.004G182800 [exp] 615 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 611 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10016454 pacid=23144857 polypeptide=Lus10016454 locus=Lus10016454.g ID=Lus10016454.BGIv1.0 annot-version=v1.0 ATGGGACTTCGTTGCTCCAAGTTGCCTCTCTGCTGCTGCTGCCGTTCCTCCAATCTCAACACCAACCTCCACGCCTTCTCCGATCTCGCGAATGGCGAGC AGCTGCCAGGGTTTAGAGAGTACAGCTTAGAGCAGTTGAGGATAGCGACGGCGGGGTTCAGTCCGGACAACATAGTGTCGGAGCATGGGGAGAAAGCTCC GAATGTGGTTTACAAAGGGAAGCTCCGTTCCGACGAGCGGTGGATTGCTGTCAAGCGCTTCAACAAGTCTGCTTGGCCTGATTCTCGTCAATTTCTAGCG GAGGCGAAAGCTGTAGGTCAGTTGAGGAGCGAGAGACTGGTGACCTTGTTAGGGTGTTGCTGTGAAGGTGAAGAGAGATTGCTTGTTGCTGAGTTCATGC CTAATGAGACTCTTTCTAAGCATCTTTTCCACTGGGAAAATCAGCCGATGAAATGGCCAATGAGGTTGAGGGTGGCTCTCTATCTGGCTCAGGCTTTGAA TTACTGCAGTAGCAAAGGGAGAGCTCTGTATCATGATCTTAACGCATATAGGGTTTTGTTTGATCAGGAGGGTAATCCAAGGCTTTCATGCTTTGGTCTG ATGAAGAACAGTAGGGATGGGAAGAGTTACAGTACGAACTTGGCATTCACTCCTCCTGAGTACTTGCGGACTGGACGGGTTACTCCGGAGAGTGTCGTTT ACAGCTTTGGAACCCTGCTGCTTGATCTTCTTAGTGGGAAGCATATACCGCCAAGCCATGCACTCGATCTCTTACGGGGGAAGAATTTTATTATGCTGAT GGATTCGTGCTTGGAGGAACACATTTCAAATGACGATGGTACTGAGTTAGTGCTACTAGCCTCGCGTTGCTTACAGTTTGAACCTCGTGAAAGGCCTAAT GCAAAGTCCCTTGTTATTGGTCTCACTCCCCTTCAGAAGGAAACAGGGGTTCCTTCCTATGAGTTAATGGGTATTGCACACGGAACACAACCCTCGGAGG AAACAATATCGCTGTCACCCTTAGGCGAAGCTTGCTCAAGGCTGGATCTTACTGCCATTCATGAAATACTAGAAAAGGTTGGATACAAAGATGATGAGGG TATTGCAAATGAGCTTTCGTTCCAGATGTGGACAGATCAAATACAGGAAACACTCAACTCTAAGAAGCGTGGCGATGCTGCTTTCCGATCAAAGGACTTC TCGACAGCCATCCACTCCTACACACAATTCATTGATGGCGGGACTATGGTCTCCCCGACCGTGTTTGCGAGGCGGTGCCTGTGCTATTTAGCAGGTGAGA TGCCACAACAGGCTCTTGGAGATGCTATGCAAGCTCAAGCTGTGTCTCCTGAGTGGCCCACTGCATTCTATCTCGAAGCCGCTGCTCTCATCAGCCTTGG AATGGACACACTGCAAATCTACTAA
AA sequence Show only first row Show all	>Lus10016454 pacid=23144857 polypeptide=Lus10016454 locus=Lus10016454.g ID=Lus10016454.BGIv1.0 annot-version=v1.0 MGLRCSKLPLCCCCRSSNLNTNLHAFSDLANGEQLPGFREYSLEQLRIATAGFSPDNIVSEHGEKAPNVVYKGKLRSDERWIAVKRFNKSAWPDSRQFLA EAKAVGQLRSERLVTLLGCCCEGEERLLVAEFMPNETLSKHLFHWENQPMKWPMRLRVALYLAQALNYCSSKGRALYHDLNAYRVLFDQEGNPRLSCFGL MKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLLRGKNFIMLMDSCLEEHISNDDGTELVLLASRCLQFEPRERPN AKSLVIGLTPLQKETGVPSYELMGIAHGTQPSEETISLSPLGEACSRLDLTAIHEILEKVGYKDDEGIANELSFQMWTDQIQETLNSKKRGDAAFRSKDF STAIHSYTQFIDGGTMVSPTVFARRCLCYLAGEMPQQALGDAMQAQAVSPEWPTAFYLEAAALISLGMDTLQIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59010			Protein kinase protein with te...		Lus10016454 [exp]	0	1
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10003541 [exp]	3.2	0.9228
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10006548 [exp]	5.1	0.9360
AT1G21740			Protein of unknown function (D...		Lus10024007 [exp]	6.2	0.9390
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10026114 [exp]	7.5	0.9333
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000468 [exp]	7.9	0.9056
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10014167 [exp]	8.3	0.8842
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	11.4	0.9310
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	14.3	0.9337
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10028457 [exp]	17.5	0.9157
AT4G35240			Protein of unknown function (D...		Lus10025077 [exp]	18.0	0.9196

Compare expression of checked genes

Lus10016454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.