Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59020 229 / 2e-64 Protein of unknown function (DUF3527) (.1) AT2G37930 138 / 9e-35 Protein of unknown function (DUF3527) (.1) AT5G01030 134 / 2e-32 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT1G63520 100 / 8e-22 Protein of unknown function (DUF3527) (.1) AT1G04490 91 / 2e-19 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT2G33360 92 / 3e-19 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT4G11450 69 / 7e-12 Protein of unknown function (DUF3527) (.1) AT2G29510 45 / 0.0002 Protein of unknown function (DUF3527) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040721 [exp] 1296 / 0 AT5G59020 291 / 1e-86 Protein of unknown function (DUF3527) (.1) Lus10017200 [exp] 168 / 4e-43 AT5G01030 229 / 4e-64 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10021110 [exp] 167 / 9e-43 AT5G01030 291 / 1e-86 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10023729 [exp] 97 / 2e-20 AT2G33360 355 / 9e-115 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10014479 [exp] 93 / 2e-19 AT2G33360 287 / 4e-91 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10002006 [exp] 77 / 4e-14 AT4G11450 477 / 3e-159 Protein of unknown function (DUF3527) (.1) Lus10035493 [exp] 76 / 1e-13 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G039300 [exp] 444 / 2e-143 AT5G59020 351 / 1e-107 Protein of unknown function (DUF3527) (.1) Potri.001G246200 [exp] 434 / 2e-139 AT5G59020 362 / 9e-112 Protein of unknown function (DUF3527) (.1) Potri.016G105500 [exp] 161 / 9e-41 AT5G01030 257 / 5e-73 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.006G093600 [exp] 158 / 8e-40 AT5G01030 219 / 6e-60 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.010G066200 [exp] 103 / 9e-23 AT2G33360 333 / 3e-106 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.008G171400 [exp] 100 / 2e-21 AT2G33360 327 / 1e-103 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.003G127500 [exp] 90 / 3e-18 AT4G11450 521 / 2e-176 Protein of unknown function (DUF3527) (.1) Potri.001G104200 [exp] 82 / 1e-15 AT4G11450 530 / 5e-180 Protein of unknown function (DUF3527) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF12043 [flax] [poplar] DUF3527 Domain of unknown function (DUF3527)
Representative CDS sequence Show only first row Show all	>Lus10016455 pacid=23144845 polypeptide=Lus10016455 locus=Lus10016455.g ID=Lus10016455.BGIv1.0 annot-version=v1.0 ATGGAAGATCACTTGGAGCTTGAAAGAAATTTAAGGAATCATCCTGAGAGATCCAAGCCTGAAAAGCATCTGTCTTATTCTGATCTTCACCATCAGATCA CGGGGAGTGTGAAAGAGATCCCGAGTAGAATAGTAGGGGCTCAGAAGAGGCAACATAAGAAAGCAGCAGCAACTGAAGAAGAGGAGCTTGTGAAGTACAT GTCAAATTTGCCAAGCTATCTGGAGAAAGGTAGAGCTCAAAAAGAGAAAGCTTTGAATGTTGGAGTGCTAGACTGGAGTCGTCTCGAAAAGTGGCAGTAC AGCAACCAGCAGCCTAGAAGGTTTTCAGTGTCGAGTAACAGCAATCCGTGCTCATCCTACGCATCATCGGAAGGTGAACCTTCTATGAGTTCCAGTAGGG GTCCGAGGTTTTCTCCTTCTCGTCAAAGGATGCGGCGTCCTTCTTTGCAATTTCAACTGTCGTCATCTCCAGCAATAGGGAGTTGTGTTGAAGTTAATGG AAGTTCTCAACTTCAAAATCATTTGAAGACAATTAACACTGTCACTGAACAAGCAACCTTCAGGACAAGCAAAGCTATTTCACGTGACCCTCAAGAAATG AATTTTGAACAATGGAAGCGAAAGGTCGAGGAACAAAAAATGAAGAACACGGACCAGGAATGCACAAGGAGACCTGAGAAGATGCAGGAACGGAAGGTGA ACGTTGTAGGCCAGGAAAGCTTCCAAAAGGGTAAACCAATTGTTCTTCTTCTACCAAAAGATGCTCCAAAGAATCATCCTCACTCTGGGATTCCCCAGTG TCCGAAGTCAACAACAATCCAAGAAGGTCAAACATCAGTAAATCAAAGCAGTGCCCTGCAGAAAAGTGGAATACGTTATACAGTGGTCAGTTCAACTGAA AGTGAGCGAGACGTTGAGAGTCGGAGGTGCTTAAGGGATGCAGAGAATGTAAGCAATAGTCGTAACATCTTGGAGGTGAGAGAATCTACCAAACCGCAAA TAAATTCTGGTCTGAAACCGGGCAAGGTGGCGACTCCAGAAAAGATAAGGAGCACATCTCCCTTCCGAAGACTTAGTATAGGTATGGGAAAGTTAGCTAG AAGCCCGATTCAAAAAGAGGCTGCAACTAGTAAGTCTACAAACTCAATTGTGGAAGATGGTCTGGCTCTTAGACAGGAAACTTCAAGCTACGACAAACGA AATGCTACCAGTCGAGGCAGGTCAAGATCAAGCCCTTTGAGACGACTACTGGATCCATTACTGAAGCCAACAACGAGAGATTCTACTTCAGTAGAGACAT GCTATAAGCCATCTAATAGGCAAGCATTCCCTTCATCTGGTAGTTCACAAGCTGGAAGAGCAAGCTTGGATGCGAACAAGTACAGGACTATAAATACTCA GAAGAAACCAGCTTCATATCAGGCTTTGTTGCGAGTTGCAGTTAAGAACGGGCAGCCTCTTTTCACATTTGCTGTTAACAATGAACCTGATATCCTCGCT GCCACAGTGAAGAAGTTAAGTACCTCACCGAGTGAATACTATAGTTGCGTTTATACTTTCTTTTCAATTCAAGAATCAAAGAAGAAGAATGGGGGTTGGT TAAATCAAGGTGGGAAAGGAAAGGGCAAAGGTAATGAGTATATCCACACTGTTGTAGCCCAACTCAGAGCTTCTGGCACTCGGTTAGCCAGAGAGTTTGT TCTGTTTGCTGTCGACTTGATACAAACTGAACAGCTCGAAACGTTGAATTGCCAGCCAAATGACGAGCTTGCTGCTATTGTCGTCAAGCCTATGATGGAG AATGAAAGCGGCATCAGTACCACTGCTGTACTTCCAAGTGGTGTACATTCAATGCCAACCAAAGGAGGGCCTTCATCCTTGCTTCAACGTTGGAGATCTG GGGGATCGTGTGATTGCGGAGGTTGGGACTTGGGTTGTAAGCTTCAAATTCTAGCCAACAATCCAGGTGCACCGTCCGAGCCTAACTCCACAGCAGAGAA ATTTGAGCTCATCCCTCAGGGAGTAGAAGGTAACGGTCGGCCTGTGTTCAGCCTGACACCTTTTAAGGATGGTATCCACACGGTTGAGTTTCATTCCTCA CTTTCAACTCTGCAAGCATTCTCCCTCTGCATTGCAGCTGTAGATGGTAAGAAACTTAACTGCAACTCGCTTGAGGAAAAAGCTACATTGGAGGCCATGA TAGCTCGCAACGAGGAGGTTCCCGCTACACGGTACATCCCATATCCACCGGTTTCTCCAGCAGGAAGGGTATAA
AA sequence Show only first row Show all	>Lus10016455 pacid=23144845 polypeptide=Lus10016455 locus=Lus10016455.g ID=Lus10016455.BGIv1.0 annot-version=v1.0 MEDHLELERNLRNHPERSKPEKHLSYSDLHHQITGSVKEIPSRIVGAQKRQHKKAAATEEEELVKYMSNLPSYLEKGRAQKEKALNVGVLDWSRLEKWQY SNQQPRRFSVSSNSNPCSSYASSEGEPSMSSSRGPRFSPSRQRMRRPSLQFQLSSSPAIGSCVEVNGSSQLQNHLKTINTVTEQATFRTSKAISRDPQEM NFEQWKRKVEEQKMKNTDQECTRRPEKMQERKVNVVGQESFQKGKPIVLLLPKDAPKNHPHSGIPQCPKSTTIQEGQTSVNQSSALQKSGIRYTVVSSTE SERDVESRRCLRDAENVSNSRNILEVRESTKPQINSGLKPGKVATPEKIRSTSPFRRLSIGMGKLARSPIQKEAATSKSTNSIVEDGLALRQETSSYDKR NATSRGRSRSSPLRRLLDPLLKPTTRDSTSVETCYKPSNRQAFPSSGSSQAGRASLDANKYRTINTQKKPASYQALLRVAVKNGQPLFTFAVNNEPDILA ATVKKLSTSPSEYYSCVYTFFSIQESKKKNGGWLNQGGKGKGKGNEYIHTVVAQLRASGTRLAREFVLFAVDLIQTEQLETLNCQPNDELAAIVVKPMME NESGISTTAVLPSGVHSMPTKGGPSSLLQRWRSGGSCDCGGWDLGCKLQILANNPGAPSEPNSTAEKFELIPQGVEGNGRPVFSLTPFKDGIHTVEFHSS LSTLQAFSLCIAAVDGKKLNCNSLEEKATLEAMIARNEEVPATRYIPYPPVSPAGRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59020			Protein of unknown function (D...		Lus10016455 [exp]	0	1
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008741 [exp]	1.4	0.8790
AT3G61700			Plant protein 1589 of unknown ...		Lus10004016 [exp]	2.8	0.8808
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10011510 [exp]	4.5	0.8764
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	6.2	0.8785
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029756 [exp]	7.7	0.8484
AT5G51290			Diacylglycerol kinase family p...		Lus10016714 [exp]	8.4	0.8629
AT2G30630			P-loop containing nucleoside t...		Lus10033855 [exp]	8.7	0.8401
AT2G30630			P-loop containing nucleoside t...		Lus10014744 [exp]	9.4	0.8390
AT5G45030			Trypsin family protein (.1.2)		Lus10038347 [exp]	9.8	0.8288
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10043022 [exp]	9.8	0.8571

Compare expression of checked genes

Lus10016455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.