Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29500 178 / 4e-58 HSP20-like chaperones superfamily protein (.1) AT5G59720 172 / 1e-55 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT1G07400 169 / 2e-54 HSP20-like chaperones superfamily protein (.1) AT3G46230 165 / 6e-53 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT1G53540 163 / 3e-52 HSP20-like chaperones superfamily protein (.1) AT1G59860 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) AT4G10250 99 / 1e-26 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT5G12020 71 / 4e-16 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G12030 70 / 1e-15 AT-HSP17.6A heat shock protein 17.6A (.1) AT5G37670 69 / 1e-15 HSP15.7CI HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040723 [exp] 231 / 3e-79 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 227 / 3e-77 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 226 / 7e-77 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 213 / 5e-72 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 168 / 4e-54 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10040830 [exp] 140 / 4e-43 AT1G53540 236 / 6e-81 HSP20-like chaperones superfamily protein (.1) Lus10040560 [exp] 99 / 2e-26 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 99 / 4e-26 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 93 / 3e-24 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G187450 [exp] 198 / 5e-66 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.004G187202 [exp] 197 / 9e-66 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 196 / 5e-65 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 194 / 1e-64 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.019G081200 [exp] 192 / 1e-63 AT2G29500 186 / 3e-61 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 191 / 5e-63 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 190 / 6e-63 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 190 / 8e-63 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 185 / 8e-61 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.001G238700 [exp] 178 / 4e-58 AT1G53540 195 / 8e-65 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10016456 pacid=23144908 polypeptide=Lus10016456 locus=Lus10016456.g ID=Lus10016456.BGIv1.0 annot-version=v1.0 ATGTCGCTGATTCCAAGCTTCTTCGGTAACCGCCGATCCGACCCCTTCTCCGCCCTGGATATGTGGGATCCGATTAGGGATTTCTCCTCCTTCAACTTCC CCTCCTCATCTCTGATCCTCGGCGGCGGGGAGAACTCTGCTTTCGTGAACACGCGGATCGACTGGAAGGAGACTCCAGAGGCGCACGTGTTCAAGGCGGA CCTCCCGGGGCTGAAGAAGGAGGAGATTAAGGTCGAGGTGGAGGAAGATCGGGTGCTGCAGATCAGCGGGGAAAGGAACGTGGAGAAGGAGGATAAGAAC GACACGTGGCACAGGGTTGAGAGGAGCAGTGGGAAATTCATGAGGAGGTTCAGGCTCCCCGAGAATGCTAAGATGGAGGAGGTTAAGGCGGCGATGGAGA ACGGCGTGCTGACGGTGACGGTTCCCAAGGCGGAGGTGAAGAAGCCTGAAGTCAAGGCCATTGAGATATCTGGTTAA
AA sequence Show only first row Show all	>Lus10016456 pacid=23144908 polypeptide=Lus10016456 locus=Lus10016456.g ID=Lus10016456.BGIv1.0 annot-version=v1.0 MSLIPSFFGNRRSDPFSALDMWDPIRDFSSFNFPSSSLILGGGENSAFVNTRIDWKETPEAHVFKADLPGLKKEEIKVEVEEDRVLQISGERNVEKEDKN DTWHRVERSSGKFMRRFRLPENAKMEEVKAAMENGVLTVTVPKAEVKKPEVKAIEISG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	0	1
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	1.7	0.9867
AT1G07400			HSP20-like chaperones superfam...		Lus10040722 [exp]	1.7	0.9751
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	2.4	0.9797
AT1G30070			SGS domain-containing protein ...		Lus10038500 [exp]	3.2	0.9611
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10018387 [exp]	3.5	0.9551
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10007625 [exp]	4.4	0.9307
AT3G13130			unknown protein		Lus10038793 [exp]	4.6	0.9549
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	4.9	0.9492
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	4.9	0.9726
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10041207 [exp]	6.6	0.9458

Compare expression of checked genes

Lus10016456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.