Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29500 178 / 3e-58 HSP20-like chaperones superfamily protein (.1) AT1G07400 160 / 4e-51 HSP20-like chaperones superfamily protein (.1) AT3G46230 159 / 2e-50 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT5G59720 156 / 3e-49 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT1G53540 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) AT1G59860 146 / 1e-45 HSP20-like chaperones superfamily protein (.1) AT4G10250 102 / 1e-27 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT5G12020 69 / 2e-15 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G37670 69 / 2e-15 HSP15.7CI HSP20-like chaperones superfamily protein (.1) AT5G12030 68 / 6e-15 AT-HSP17.6A heat shock protein 17.6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040723 [exp] 224 / 4e-76 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 204 / 3e-68 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 203 / 5e-68 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 203 / 9e-68 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 156 / 4e-49 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10040830 [exp] 139 / 2e-42 AT1G53540 236 / 6e-81 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 103 / 5e-28 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 100 / 4e-27 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 100 / 1e-26 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G187450 [exp] 184 / 1e-60 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.004G187202 [exp] 181 / 2e-59 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 181 / 2e-59 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 180 / 6e-59 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 179 / 2e-58 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 177 / 8e-58 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.019G081200 [exp] 176 / 2e-57 AT2G29500 186 / 3e-61 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 174 / 1e-56 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 173 / 3e-56 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.001G238700 [exp] 172 / 2e-55 AT1G53540 195 / 8e-65 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10016458 pacid=23144801 polypeptide=Lus10016458 locus=Lus10016458.g ID=Lus10016458.BGIv1.0 annot-version=v1.0 ATGTCGCTGATTCCAAGCTTCTTCGGCAACCGCCGCCCCGACCCCCCCCCCCGCCGCTCCGACCCGTTCTCGGCCCTGGACGTGTGGGATCCGTTCAGGG ATTTCTCCTCCTCTTCTCTGATCCCCGGCGGCGGGGAAAACTCTGCTTTCGTGAACATGAGGATCGACTGGAAGGAGACTCCAGAGGCGCACGTGTTCAA GGCGGACCTACCCGGACTGAAGAAGGAGGAGATTAAAGTCGAGGTGGAGGAAGATCGGGTGCTGCAGATCAGCGGGGAGAGGAACGTGGAGAAGGAGGAT AAGAACGACACGTGGCACAGGGTTGAGAGGAGCAGCGGGAAGTTCATGAGGAGGTTCAGGCTCCCGGAGAATGCTAAGATGGAGGAGGTTAAGGCGGCGA TGGAGAACGGCGTGCTGACGGTGACAGTTCCCAAGGCGGAGGTGAAGAAGCCTGAAGTCAAGGCCATCGAGATATCTGGTTAG
AA sequence Show only first row Show all	>Lus10016458 pacid=23144801 polypeptide=Lus10016458 locus=Lus10016458.g ID=Lus10016458.BGIv1.0 annot-version=v1.0 MSLIPSFFGNRRPDPPPRRSDPFSALDVWDPFRDFSSSSLIPGGGENSAFVNMRIDWKETPEAHVFKADLPGLKKEEIKVEVEEDRVLQISGERNVEKED KNDTWHRVERSSGKFMRRFRLPENAKMEEVKAAMENGVLTVTVPKAEVKKPEVKAIEISG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29500			HSP20-like chaperones superfam...		Lus10016458 [exp]	0	1
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10022322 [exp]	1.4	0.9603
AT1G07400			HSP20-like chaperones superfam...		Lus10040722 [exp]	2.4	0.9490
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10020815 [exp]	2.4	0.9410
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10042408 [exp]	4.2	0.8903
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10012848 [exp]	7.7	0.8700
AT2G29500			HSP20-like chaperones superfam...		Lus10040723 [exp]	9.1	0.8207
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	11.5	0.9136
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026100 [exp]	11.8	0.9053
AT1G53540			HSP20-like chaperones superfam...		Lus10040830 [exp]	13.3	0.8862
AT3G13130			unknown protein		Lus10038793 [exp]	13.6	0.8968

Compare expression of checked genes

Lus10016458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.