Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59590 342 / 1e-113 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G11340 338 / 5e-112 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT5G59580 331 / 3e-109 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT3G46670 330 / 4e-109 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT3G55700 330 / 8e-109 UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 327 / 1e-107 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT5G38010 318 / 5e-104 UDP-Glycosyltransferase superfamily protein (.1) AT3G46690 316 / 2e-103 UDP-Glycosyltransferase superfamily protein (.1) AT3G46720 314 / 1e-102 UDP-Glycosyltransferase superfamily protein (.1) AT5G05880 313 / 2e-102 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040725 [exp] 377 / 4e-127 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10016460 [exp] 372 / 3e-125 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10040246 [exp] 369 / 6e-124 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016461 [exp] 368 / 1e-123 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 356 / 7e-119 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10037268 [exp] 341 / 1e-112 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004672 [exp] 318 / 2e-103 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 277 / 8e-88 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 273 / 3e-86 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245900 [exp] 391 / 6e-133 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.010G195600 [exp] 379 / 7e-128 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 368 / 1e-123 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195500 [exp] 363 / 7e-122 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G039300 [exp] 322 / 2e-105 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.017G052400 [exp] 275 / 5e-87 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 273 / 2e-86 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.007G095000 [exp] 273 / 3e-86 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.017G052100 [exp] 271 / 2e-85 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 269 / 9e-85 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10016459 pacid=23144863 polypeptide=Lus10016459 locus=Lus10016459.g ID=Lus10016459.BGIv1.0 annot-version=v1.0 ATGTTGCAGCCGACCGACGCCGGAAACCCACAACCGTCTACGTCTCCCGGTCAACGAAAACGACGGCGACTCGTGATGGTCCCATTCCCAATCCAAGGAC ACATAACCCCAATGCTCCAGCTGGCAACAATCCTGCACTCAAAAGGATTCCCCATAACAATCGCCCACCCGGTCCTCAACGCGCCGAACCCTTCGGATTA CCATCCGGATTTCAAGTTTGTGGCGCTGCAGCCGGACGGGGTGTCAGACCGCAGCAACCACCTGTTCACGCTGGGCGTGGGGGGCGTGGTCGAGCTCCTC GCGGCCAACTGCCCTGCGCCGTTTAAGGAAGCATTGGGGAAGATGATGGATGAAGATGGTAATAAGCCTTGTGTGATATACGATGGGTTGATGTATTTTG CTGAAGGTGTGGGTAAGGAGATGGGGATTCCTAGCTTGGTTCTGAGGACGAGTTGTGCTGCTAATTTGTTGACGTACCATGTTTTCCCTCAGCTTCGTGA GAAGGGGCATCTTCCTGAGCAATATTCGACGTCGTCGGAGCCGGTGCCGGGACTCCCAAACCTCCGATACAAAGACCTCCCATCCTACACCACCAACTGG CCGATAGAAGCCCAACTAGACTTCTTTGCCACAGTTCGCCAGACCCGATCAGCCACCGCCGTCATCTGGAACACATCCACCACCCTCGAATCCTCATCCT TATCCATCATCCACCAAAACCACACCGTCCCACAGATCCCCATCTTCCCGGTCGGCCCATTCCACAAACAAATCCTCCAACCCAAAACCGAAACCCTAAC CGATGAGCAAACCTCCGCCCTCGCCTTCCTCGACCAACAACCGCCCAAATCCGTCCTCTACATAAGCTTCGGAAGCGTCGCCGTCGTCACCCCAGCCGAA TTCCAAGAAATGGCCTGGGGAATCGCCAACAGCGGCCAGCGGTTCTTCTGGGTGGTCCGACCGGGTTTGGTATTTGGTTCGGCTACGACCGATACGCTTC TTCCGGAAGGGTTTTCAGAGAAAACAGGGGAGAGAGGGAAAGTGGTGAAATGGGCCCCGCAGAGGAAGGTGCTGGGACACGCTGCGGTGGGAGGGTTTTG GACACACTGCGGGTGGAACTCGACGTTGGAGGCGGTGGCAGATGGGGTTCCAATGATGTGTCGACCATGGTTTGCCGACCAGCCGGTGATTGCCAGGCAG GTGATTGATGGGTGGGGAGTTGGGGTTGAAATGAAGAAGGATATGGGGAAGGAGGAGATTGAGAAGGTGATTAGGAGGTTGATGGTGGATGCAGATGGTG AAGGGATTAGGAAGAATGCTTTGGAGTTGAAGAAGAAGGTTTTGGGTAGTTTGGCTGAGGGCGGGTCCGGTTTTGACGGGTTGAACCAGTTGGTTGAGTT TATTGGTTCTTGTTAA
AA sequence Show only first row Show all	>Lus10016459 pacid=23144863 polypeptide=Lus10016459 locus=Lus10016459.g ID=Lus10016459.BGIv1.0 annot-version=v1.0 MLQPTDAGNPQPSTSPGQRKRRRLVMVPFPIQGHITPMLQLATILHSKGFPITIAHPVLNAPNPSDYHPDFKFVALQPDGVSDRSNHLFTLGVGGVVELL AANCPAPFKEALGKMMDEDGNKPCVIYDGLMYFAEGVGKEMGIPSLVLRTSCAANLLTYHVFPQLREKGHLPEQYSTSSEPVPGLPNLRYKDLPSYTTNW PIEAQLDFFATVRQTRSATAVIWNTSTTLESSSLSIIHQNHTVPQIPIFPVGPFHKQILQPKTETLTDEQTSALAFLDQQPPKSVLYISFGSVAVVTPAE FQEMAWGIANSGQRFFWVVRPGLVFGSATTDTLLPEGFSEKTGERGKVVKWAPQRKVLGHAAVGGFWTHCGWNSTLEAVADGVPMMCRPWFADQPVIARQ VIDGWGVGVEMKKDMGKEEIEKVIRRLMVDADGEGIRKNALELKKKVLGSLAEGGSGFDGLNQLVEFIGSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016459 [exp]	0	1
AT2G43570		CHI	"chitinase, putative", chitina...		Lus10001773 [exp]	1.0	0.9720
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Lus10017697 [exp]	20.4	0.9423
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10035178 [exp]	22.9	0.8498
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10005302 [exp]	24.2	0.9406
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	25.2	0.9411
AT3G22490			Seed maturation protein (.1)		Lus10019001 [exp]	31.3	0.8606
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	32.4	0.9405
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10033562 [exp]	36.1	0.9376
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	39.2	0.9370
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023513 [exp]	39.7	0.9365

Compare expression of checked genes

Lus10016459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.