Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59590 399 / 2e-136 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G46660 391 / 4e-133 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT5G38010 389 / 3e-132 UDP-Glycosyltransferase superfamily protein (.1) AT3G46670 385 / 7e-131 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT5G59580 385 / 7e-131 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT3G11340 379 / 3e-128 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT5G38040 370 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) AT3G46650 367 / 6e-124 UDP-Glycosyltransferase superfamily protein (.1) AT3G55700 367 / 9e-124 UDP-Glycosyltransferase superfamily protein (.1) AT5G05880 362 / 9e-122 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040725 [exp] 878 / 0 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10016461 [exp] 608 / 0 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040246 [exp] 400 / 3e-136 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 385 / 2e-130 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 372 / 3e-125 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10037268 [exp] 370 / 2e-124 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004672 [exp] 358 / 2e-119 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024584 [exp] 291 / 2e-93 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10031388 [exp] 290 / 7e-93 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245900 [exp] 477 / 9e-167 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.010G195600 [exp] 419 / 8e-144 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 410 / 2e-140 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195500 [exp] 404 / 5e-138 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G039300 [exp] 383 / 3e-129 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.009G039100 [exp] 335 / 1e-106 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) Potri.002G098400 [exp] 295 / 5e-95 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 289 / 4e-93 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 284 / 5e-91 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.005G073766 [exp] 283 / 2e-90 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10016460 pacid=23144806 polypeptide=Lus10016460 locus=Lus10016460.g ID=Lus10016460.BGIv1.0 annot-version=v1.0 ATGGGAAGTGATGAACAGTACTACCCTCGTCATCTGGTGTTCGTCCCATGTCCTTACCAAGGCCATATCAATCCTATGCTTCAGCTCGCCACCATACTTC ACTCAAGAGGATTCTCCATCTCCATCTTACACGCTCACTTCAACTCCCCTTCTCCAAGAAACCACCCTCATTTCAAGTTCATTTCCATACCAGATGGCTT GCCCGACGAGCTCGTTTCTTCCGGGAACATCCCAGCCATCCTGTTAGCTGTCAACGCCAACTGTGGCAAGCCGTTGATGGATCTCACGGCTAGAATGATG ATGCGTGGTGAAAAGTCAAGTAGTAGTGACATAGCTTGCATCATTTATGATGAACTCATGTACTGCTCTGAAGCTGTAGCGAAATCTCTTGGTCTTCCCA GCGTCATGTTGCGAACCAATACCGTCTCGACCTTCATCGCTCGTGATCATGTTCTGAAGCTGATCGACCAAGGTCGAGTCCCACTGCAAGATTCAATTCT AGACCAACCGGTCCCAAAGCATTACCCGTTAAGATACAAAGACCTTCCGATATCGATCTTCAAGCCAGTGACGAACTTCATCGAAATCGTCAACAATCTC CGCGAGGTGAGATCGAGCTCAGCCGTGATATGGAACACAATGAACTGTCTGGAGAATTCACTACTAGCCCAAGTAAAGCAACAATGCAAAGTACCAATCT TTACAGTCGGACCAATGCACAAATTCTCCCCACCAATCTCCACCAGCTTACTAAAAGAAGACTACACCTGCATCCCATGGCTCGACTCGCAGGCACCGAA ATCAGTCATCTACGTCAGCTTGGGGAGCCTGGCGTGCATAAGCGAGACCGAGTTAGCCGAGATGGCATGGGGGTTAGCCAACTCCAACATCCCTTTCCTC TGGGTGGTCCGTCCCGGTCTGGTTCGCGGTTCGACCGCCCTTCCAACCGGGTTCAAACAAGCCGTGGGGGACAGAGGCCGAATCGTGCAATGGGCGCCTC AGAAGGAGGTTCTGTCACATGATGCTGTAGGTGGGTTCTGGAGCCACTGCGGATGGAACTCGACGATGGAGAGTATCGGGGAAGGGGTGCCGTTGGTTTG CAGGCCGAATTTCGCGGACCAGAAGGTGACGGCTAGGTATGTTACTCATGTGTGGAGAGTTGGGTTGCAGCTTGAAGGTGATGAGCTTGAGAGAGAAGTA GTGAGTGGGACTTTGAGGAGGTTGATGATTGGGGAAGAAGGTGACGAGATTAGGAGAAGAGCAGAGAAGGTTAGGGGGGAAGTGGAGGTTGAGACGACGA AAGGAGGGTCGTCGGTTAAGGATTTGGATGAGTTGGTCAACATGATTCGGTCGTTCTAG
AA sequence Show only first row Show all	>Lus10016460 pacid=23144806 polypeptide=Lus10016460 locus=Lus10016460.g ID=Lus10016460.BGIv1.0 annot-version=v1.0 MGSDEQYYPRHLVFVPCPYQGHINPMLQLATILHSRGFSISILHAHFNSPSPRNHPHFKFISIPDGLPDELVSSGNIPAILLAVNANCGKPLMDLTARMM MRGEKSSSSDIACIIYDELMYCSEAVAKSLGLPSVMLRTNTVSTFIARDHVLKLIDQGRVPLQDSILDQPVPKHYPLRYKDLPISIFKPVTNFIEIVNNL REVRSSSAVIWNTMNCLENSLLAQVKQQCKVPIFTVGPMHKFSPPISTSLLKEDYTCIPWLDSQAPKSVIYVSLGSLACISETELAEMAWGLANSNIPFL WVVRPGLVRGSTALPTGFKQAVGDRGRIVQWAPQKEVLSHDAVGGFWSHCGWNSTMESIGEGVPLVCRPNFADQKVTARYVTHVWRVGLQLEGDELEREV VSGTLRRLMIGEEGDEIRRRAEKVRGEVEVETTKGGSSVKDLDELVNMIRSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016460 [exp]	0	1
AT1G78895			Reticulon family protein (.1)		Lus10034807 [exp]	3.6	0.9132
AT1G01490			Heavy metal transport/detoxifi...		Lus10017520 [exp]	5.1	0.9260
AT2G04240		XERICO	RING/U-box superfamily protein...		Lus10034407 [exp]	7.1	0.9137
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039348 [exp]	9.9	0.9214
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026256 [exp]	10.6	0.9016
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	12.7	0.9184
AT4G34660			SH3 domain-containing protein ...		Lus10017500 [exp]	13.5	0.8844
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	13.7	0.9210
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026255 [exp]	14.1	0.8924
AT4G13180			NAD(P)-binding Rossmann-fold s...		Lus10010673 [exp]	14.4	0.9200

Compare expression of checked genes

Lus10016460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.