Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59030 148 / 5e-46 COPT1 copper transporter 1 (.1) AT2G26975 147 / 7e-46 Ctr copper transporter family (.1) AT3G46900 139 / 1e-42 COPT2 copper transporter 2 (.1) AT5G59040 120 / 2e-35 COPT3 copper transporter 3 (.1) AT2G37925 115 / 3e-33 COPT4 copper transporter 4 (.1) AT5G20650 71 / 3e-16 COPT5 copper transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040726 [exp] 155 / 1e-48 AT2G26975 138 / 2e-42 Ctr copper transporter family (.1) Lus10021108 [exp] 130 / 5e-39 AT2G37925 120 / 2e-35 copper transporter 4 (.1) Lus10016463 [exp] 96 / 3e-26 AT2G26975 92 / 5e-25 Ctr copper transporter family (.1) Lus10017204 [exp] 95 / 1e-25 AT5G59030 88 / 3e-23 copper transporter 1 (.1) Lus10023045 [exp] 92 / 6e-24 AT2G26975 84 / 2e-21 Ctr copper transporter family (.1) Lus10021107 [exp] 86 / 5e-22 AT5G59040 87 / 1e-22 copper transporter 3 (.1) Lus10017205 [exp] 85 / 2e-21 AT2G26975 87 / 2e-22 Ctr copper transporter family (.1) Lus10032428 [exp] 81 / 9e-20 AT2G26975 87 / 1e-22 Ctr copper transporter family (.1) Lus10016462 [exp] 71 / 8e-17 AT5G59030 76 / 3e-19 copper transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038700 [exp] 160 / 7e-51 AT2G26975 133 / 2e-40 Ctr copper transporter family (.1) Potri.009G038800 [exp] 153 / 5e-48 AT5G59030 148 / 4e-46 copper transporter 1 (.1) Potri.001G246000 [exp] 153 / 5e-48 AT5G59030 134 / 9e-41 copper transporter 1 (.1) Potri.006G093300 [exp] 137 / 5e-42 AT2G37925 114 / 3e-33 copper transporter 4 (.1) Potri.006G093200 [exp] 106 / 6e-30 AT3G46900 89 / 6e-23 copper transporter 2 (.1) Potri.006G140700 [exp] 65 / 1e-13 AT5G20650 151 / 7e-48 copper transporter 5 (.1) Potri.006G219200 [exp] 56 / 2e-10 AT5G20650 140 / 1e-43 copper transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [flax] [poplar] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Lus10016464 pacid=23144800 polypeptide=Lus10016464 locus=Lus10016464.g ID=Lus10016464.BGIv1.0 annot-version=v1.0 ATGGACCACGGCGGAATGCCCGGCATGGATGGAGGCGGCGGCGGCATGCCTGGAATGGGCGGCGCCCCACCGATGAGCGACGCGGCGGCCGGGACGATGG TGATGGATCACATGACGTTTTTCTGGGGCAAGAAGGCCGAAATTCTATTCTCCGGATGGCCTGGATCTAGGTCCGGGATGTACGCCTTGGCTCTGATTTT CGTATTCGCGTTGGGCTTACTCGTCGAGTGGCTCTCTCACTCCCGATTGATGAACCCTAACTCGGGCAGTAAGGCAACAGGTCTGGTTCAGACGGCGGTC CACTCGGTTCGAGTCGGGATGAGTTACCTGGTGATGCTAGCGGTTATGTCATTCAACGGCGGCGTTTTCTTGGCGGCTATAGGTGGGCACACACTGGGCT TCTTTCTGTTTGGAAGTAAGGTTTTCAAGAAATCTGCTGAGTCTCATGGTGATGGTGGTAAAACTTCCTCCGATGATCATATCCCTTTACACCATTAA
AA sequence Show only first row Show all	>Lus10016464 pacid=23144800 polypeptide=Lus10016464 locus=Lus10016464.g ID=Lus10016464.BGIv1.0 annot-version=v1.0 MDHGGMPGMDGGGGGMPGMGGAPPMSDAAAGTMVMDHMTFFWGKKAEILFSGWPGSRSGMYALALIFVFALGLLVEWLSHSRLMNPNSGSKATGLVQTAV HSVRVGMSYLVMLAVMSFNGGVFLAAIGGHTLGFFLFGSKVFKKSAESHGDGGKTSSDDHIPLHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10016464 [exp]	0	1
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10043391 [exp]	1.0	0.8637
AT5G10530			Concanavalin A-like lectin pro...		Lus10020446 [exp]	1.4	0.8587
					Lus10039856 [exp]	4.0	0.8342
AT2G23200			Protein kinase superfamily pro...		Lus10012101 [exp]	5.9	0.8336
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023034 [exp]	6.3	0.7918
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031230 [exp]	7.1	0.8423
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10041460 [exp]	7.5	0.7928
AT2G45600			alpha/beta-Hydrolases superfam...		Lus10009308 [exp]	14.5	0.7703
AT4G38810			Calcium-binding EF-hand family...		Lus10042380 [exp]	15.7	0.7400
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034664 [exp]	18.3	0.7870

Compare expression of checked genes

Lus10016464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.