Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54000 45 / 2e-05 unknown protein AT5G59050 44 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015768 [exp] 173 / 2e-53 ND 43 / 8e-05 Lus10001433 [exp] 72 / 4e-14 AT5G59050 80 / 9e-17 unknown protein Lus10001626 [exp] 66 / 3e-12 AT5G59050 77 / 4e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038600 [exp] 63 / 3e-11 AT5G59050 112 / 3e-28 unknown protein Potri.006G093000 [exp] 42 / 0.0003 AT3G54000 79 / 9e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016465 pacid=23144862 polypeptide=Lus10016465 locus=Lus10016465.g ID=Lus10016465.BGIv1.0 annot-version=v1.0 ATGGCTGTTGTTGACCTTCACACCTCTTCAGATTCCTCCTCCTTCGAAGAACCCATCAAAGATTCCTCCAACTGGTCATCATCTCCTTCCCTTTCCCAAG ATTCATCCACTGAGTCGGAGAGTGACGATTACATTGCCGAGTTGACTCGTCAGATGGCTCACTACATGCTCCAGGATTTCGACGACCCTTGTCATATTAC GTCCCAACCAATCCAGACAGATGATTTGAAGCAACAGGAAAAATCGACAGCACTTGATCGAAATCAAGTTCACCCTGTTTCCGAGTTCCAGAAGAAGCAA GCTTTGATTGACGAGCAAATCCGCTCTGTCCAGCTTAACAGGCTGAAGCAAGAGCGTGAAAGAAAACAGAGCAATAACGGGAACAAAAAAGGCAGGGGAA ACAGAGGAAAGAACAGAGCTTTGGTCAGCGGGTTTCCGCCGCCGGTCAACAACACCGACAACAACAAGGGACAGAAACCGTCATGGTGGTCGCAACAGCA GAGCATGCGAAACGGCGGCGGCGGATGTCCGGAGGTGATGAGGGCTGTTTTCCTAGGCGATTCCGGTAAAGCATCAACGACAGGGACCGGCGTGTTCTTG CCGAGGGTCGCCGGGAACAGTACTACTTCAACCACCACTGATTCCGTTGAATCACGGAAGAAACCAGGTAAAAGTCACGGTGGTCGTTGGAATCTGGTGG GAGCAGCTTTTTTTCTTCGGTTGCTGCCCGTAGATTCCTTACCTGCTCAACCACTAAACCGGTTGACTGACCAATTAATTAAACTCCATGGGTCCTACTA A
AA sequence Show only first row Show all	>Lus10016465 pacid=23144862 polypeptide=Lus10016465 locus=Lus10016465.g ID=Lus10016465.BGIv1.0 annot-version=v1.0 MAVVDLHTSSDSSSFEEPIKDSSNWSSSPSLSQDSSTESESDDYIAELTRQMAHYMLQDFDDPCHITSQPIQTDDLKQQEKSTALDRNQVHPVSEFQKKQ ALIDEQIRSVQLNRLKQERERKQSNNGNKKGRGNRGKNRALVSGFPPPVNNTDNNKGQKPSWWSQQQSMRNGGGGCPEVMRAVFLGDSGKASTTGTGVFL PRVAGNSTTSTTTDSVESRKKPGKSHGGRWNLVGAAFFLRLLPVDSLPAQPLNRLTDQLIKLHGSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54000			unknown protein		Lus10016465 [exp]	0	1
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	2.0	0.8576
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	2.2	0.8723
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039430 [exp]	4.0	0.7393
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10022034 [exp]	4.6	0.7795
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10029873 [exp]	5.5	0.7822
AT1G52080		AR791	actin binding protein family (...		Lus10038254 [exp]	8.9	0.7901
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	11.3	0.7698
AT1G69450			Early-responsive to dehydratio...		Lus10037139 [exp]	11.9	0.8250
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Lus10018943 [exp]	16.5	0.6699
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	22.4	0.7113

Compare expression of checked genes

Lus10016465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.