Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29420 233 / 1e-77 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT3G09270 215 / 2e-70 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29490 214 / 3e-70 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT2G29450 207 / 2e-67 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT2G29440 205 / 1e-66 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT2G29480 204 / 2e-66 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29460 198 / 6e-64 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT2G29470 196 / 3e-63 GST21, ATGSTU3 GLUTATHIONE S-TRANSFERASE 21, glutathione S-transferase tau 3 (.1) AT1G59670 188 / 5e-60 ATGSTU15 glutathione S-transferase TAU 15 (.1) AT1G59700 187 / 2e-59 ATGSTU16 glutathione S-transferase TAU 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016469 [exp] 323 / 6e-113 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040761 [exp] 323 / 8e-113 AT2G29420 233 / 1e-77 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040764 [exp] 308 / 3e-107 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016467 [exp] 257 / 6e-87 AT2G29420 207 / 2e-67 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016470 [exp] 231 / 2e-77 AT2G29420 166 / 6e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021103 [exp] 228 / 1e-75 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10021102 [exp] 228 / 2e-75 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10001640 [exp] 222 / 5e-73 AT2G29420 206 / 6e-67 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040727 [exp] 216 / 7e-71 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070900 [exp] 211 / 9e-69 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.013G072400 [exp] 206 / 5e-67 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.006G024200 [exp] 202 / 1e-65 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G023200 [exp] 196 / 6e-63 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.012G052200 [exp] 193 / 6e-62 AT2G29420 220 / 2e-72 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G023340 [exp] 192 / 1e-61 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.015G042000 [exp] 186 / 4e-59 AT2G29460 197 / 7e-64 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) Potri.010G032800 [exp] 186 / 6e-59 AT1G10370 303 / 3e-105 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.016G104500 [exp] 182 / 7e-59 AT3G09270 196 / 2e-64 glutathione S-transferase TAU 8 (.1) Potri.010G035500 [exp] 184 / 2e-58 AT1G10370 301 / 2e-104 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016471 pacid=23144905 polypeptide=Lus10016471 locus=Lus10016471.g ID=Lus10016471.BGIv1.0 annot-version=v1.0 ATGGGGGACGAAATCAAGCTACTTGGAATGTGGGCTAGTCCCTACAGCCGCAGGATCGAATTAGCCTTGAAACTGAAAGGCTTACACTTCGACTATGTCG AAGAAAACCTTGCCAACAAGAGCGATCTCCTCCTCAACTCCAACCCAGTTCACAACAAGGTCCCTGTCTTGTTCCACAACGGCAAGCCAATCTCGGAATC CCTCGTCATCATCGAGTACATCGACGATACTTGGGGATCATCAAGCTACTCAATCCTGCCTCAAGATCCCTACGACAGAGCCGTTGCTCGCTTCTGGGCC AAGTTCGTTGACGAAAAAGTGTTGGAGACGTCGTTCAAGGCATTCATAGGGAAGGGGGACAAAGAACAAGAGGACGGGATTGAGGAATTCACCCAGCAAG TGAGGTATCTGGAGGGGGAGCTGAAGGGAAAGGAATATTTCGGAGGGGAAAGGATCGGATTTGTGGACATTGCCGCGTTCTACATCTTGAACGGGCTTGG AGCGTTGGAGGAAGTTTCGGGAGCAGATGTGTTGACCAAAGAGAAGTTCCCTGTATTGTTTAAATGGATGGAGAAGCTCCAAGACCACGACGTTGTGATT GGATGCCTGCCGCCGAGGGATAAGTATCTTGATTACGTCCGATCTGTTCGTGCCTTCCTTTTGGAAGCTGCTGCTTCCAAAGCAAAATCAGCTTAA
AA sequence Show only first row Show all	>Lus10016471 pacid=23144905 polypeptide=Lus10016471 locus=Lus10016471.g ID=Lus10016471.BGIv1.0 annot-version=v1.0 MGDEIKLLGMWASPYSRRIELALKLKGLHFDYVEENLANKSDLLLNSNPVHNKVPVLFHNGKPISESLVIIEYIDDTWGSSSYSILPQDPYDRAVARFWA KFVDEKVLETSFKAFIGKGDKEQEDGIEEFTQQVRYLEGELKGKEYFGGERIGFVDIAAFYILNGLGALEEVSGADVLTKEKFPVLFKWMEKLQDHDVVI GCLPPRDKYLDYVRSVRAFLLEAAASKAKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	0	1
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	1.0	0.9794
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	1.7	0.9587
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	2.4	0.9628
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	3.5	0.9558
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	4.2	0.9440
AT5G10530			Concanavalin A-like lectin pro...		Lus10004277 [exp]	4.6	0.9439
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026256 [exp]	6.2	0.9328
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042487 [exp]	6.6	0.9419
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10023931 [exp]	7.1	0.9343
AT3G24170		ATGR1	glutathione-disulfide reductas...		Lus10011734 [exp]	7.3	0.9176

Compare expression of checked genes

Lus10016471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.