Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 42 / 0.0006 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040760 [exp] 216 / 5e-67 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10040686 [exp] 167 / 2e-46 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10006343 [exp] 120 / 3e-33 ND 39 / 0.002 Lus10041818 [exp] 100 / 8e-24 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10006346 [exp] 96 / 6e-22 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10028366 [exp] 93 / 7e-22 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10028369 [exp] 84 / 7e-19 AT1G13570 66 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10002959 [exp] 75 / 4e-15 AT1G13570 112 / 4e-28 F-box/RNI-like superfamily protein (.1) Lus10040759 [exp] 70 / 5e-15 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 45 / 3e-05 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 44 / 8e-05 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08387 [flax] [poplar] FBD FBD
Representative CDS sequence Show only first row Show all	>Lus10016472 pacid=23144838 polypeptide=Lus10016472 locus=Lus10016472.g ID=Lus10016472.BGIv1.0 annot-version=v1.0 ATGGTTGCTGTGTTTGCTGCTCTTCCAGCTCTTCAGCGGCTGGAACTTGGTATTGAATTTCTGCTATTCCTTTGTAAGGACATGTCCCCTAGAAGTTGCC TGCATCTCTCCTCGAATTTGAAAGTTCTCCAAATCCCTCGTATTTTATTTGGCAAGCTGCCAGAGATGAGGGTTCTTGTTTGTCTCATCATGAGTTCACC CAACTTGCGGAAGCTCGCCATTGTGTCAAGAGGTTTCACGGTTGTAGAACCACCATGGTTTGTGGGATTTGGGAACCTTACGTTTCTGGAATTGAAAGAG CTAATTCTACCCGTTAATTTCCTTGAGACTTTTCTTCCAAAGTGTCCTCTGCTTGACGAGTTGAGAGTTGTGGAATGCAATACAGTATCTCCTGTGTTTG TAGCGCCTTCACTCAAAGTGCTCTTCTTTCACTGCCATTTCGAGTCAATTTGCTTCAAGTATGCCCCACTTCTTTCAGTGCGAACAGTTCTAGATAACGG TAAATACGAATACGTCATAGACGACTCTGAGACAACAACACAGGATACTGATTTGGTCGCTCTATTTGCTGCTCTTCCAGCGCTTCAGCAGCTGAAACTT GGTTTAGAATTGCTACTAGTAAGTTACACACAAACGTTGTTGGAACCAGAACCAGAGGACCACAGTGGAGTATGTTGTCTTCAACGCCTTGAAGAGTTTA GCATTCATCGTAGTCGTGGTACTCGGGTGGAGCTGGAATTGGTAAGGTTTGTGCTAGCCACTGCACCAGTACTTAAAAGGATCTTCATTAGGGCTAAGAA AGGCTTATCCGCCGAAAATTTTGCGAATTTTGTGGTGGAGTTGACACAGTATAAGCGCATATTGAAAGAAGCAGAGGTCAAATATGCATGGACGAAGCCC GGTGAAGCATGA
AA sequence Show only first row Show all	>Lus10016472 pacid=23144838 polypeptide=Lus10016472 locus=Lus10016472.g ID=Lus10016472.BGIv1.0 annot-version=v1.0 MVAVFAALPALQRLELGIEFLLFLCKDMSPRSCLHLSSNLKVLQIPRILFGKLPEMRVLVCLIMSSPNLRKLAIVSRGFTVVEPPWFVGFGNLTFLELKE LILPVNFLETFLPKCPLLDELRVVECNTVSPVFVAPSLKVLFFHCHFESICFKYAPLLSVRTVLDNGKYEYVIDDSETTTQDTDLVALFAALPALQQLKL GLELLLVSYTQTLLEPEPEDHSGVCCLQRLEEFSIHRSRGTRVELELVRFVLATAPVLKRIFIRAKKGLSAENFANFVVELTQYKRILKEAEVKYAWTKP GEA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016472 [exp]	0	1
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Lus10027378 [exp]	8.2	0.6848
AT4G36050			endonuclease/exonuclease/phosp...		Lus10041907 [exp]	13.5	0.6559
AT4G03230			S-locus lectin protein kinase ...		Lus10033752 [exp]	13.8	0.6814
AT3G49055			unknown protein		Lus10027489 [exp]	18.9	0.6378
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10038667 [exp]	20.7	0.6467
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	27.2	0.6715
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10026838 [exp]	29.0	0.6681
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028942 [exp]	32.7	0.6705
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10030517 [exp]	37.2	0.6639
					Lus10009425 [exp]	40.5	0.6284

Compare expression of checked genes

Lus10016472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.