Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05950 138 / 1e-41 MEE60 maternal effect embryo arrest 60 (.1) AT3G46890 120 / 4e-34 unknown protein AT3G07510 100 / 7e-27 unknown protein AT2G01580 72 / 1e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040757 [exp] 237 / 3e-74 AT5G59070 597 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10009873 [exp] 132 / 6e-39 AT5G05950 201 / 2e-66 maternal effect embryo arrest 60 (.1) Lus10025856 [exp] 87 / 1e-21 AT3G07510 244 / 3e-83 unknown protein Lus10038243 [exp] 88 / 2e-21 AT3G07510 243 / 2e-82 unknown protein Lus10000398 [exp] 70 / 2e-15 AT5G05950 130 / 2e-39 maternal effect embryo arrest 60 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038500 [exp] 152 / 4e-47 AT5G05950 150 / 2e-46 maternal effect embryo arrest 60 (.1) Potri.010G196100 [exp] 124 / 7e-36 AT5G05950 181 / 2e-58 maternal effect embryo arrest 60 (.1) Potri.002G239500 [exp] 97 / 3e-25 AT3G07510 202 / 8e-67 unknown protein Potri.014G176000 [exp] 91 / 9e-23 AT3G07510 207 / 2e-68 unknown protein Potri.014G176300 [exp] 86 / 6e-21 AT3G07510 144 / 1e-43 unknown protein Potri.014G176400 [exp] 57 / 5e-10 AT3G07510 122 / 1e-34 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016474 pacid=23144826 polypeptide=Lus10016474 locus=Lus10016474.g ID=Lus10016474.BGIv1.0 annot-version=v1.0 ATGGCGCGATCCGCCACCACTAAAATCCACGTCACCGCCTTAGACGGGATCGTCAACGTCAACTCCCTCTTCACACTGGCCCTCTTCGTCGGCCTGGCAC AACCGCTCTCTAGCTCCTCCGCCCTCATCTCCGACTCCTCCTGCCTCCCTGGCTCAGCCACCGCCGAAGACTTCGTCGTCTTCCACGTCTACGCCTTCGC CTCCTTCCTCTTCTCCAGCTTAATCGCTTTGGCTCTCAAGCAGGCCATCACACTCTCTGACAAGACCGATGCCGCTACCCCAAACACTACTAGTAATTTC GCCAGCCTGATTGCTGATTTGGTCGGAACCGGTTACTACGAGTCGCTGGTTCATATTAATTTGAAGGCTTTGAGGGTTGGGACTTTGGTTTCAGGGCTGG GTTCGATTATGGGGTGTGGATTCTTGACTATGGCACTTGTCAATTTGGTGCAGATCAAATTGGGGGTTTTGAGCTGTGGTGGATTGTATACTATATCCGC CATTGCTCCTTTGGTTACTTTGGTTCCCTTGGCCTCATTCATCTATGTTTTCCTCCTGCTTCATGCCTTTACTCGCTAG
AA sequence Show only first row Show all	>Lus10016474 pacid=23144826 polypeptide=Lus10016474 locus=Lus10016474.g ID=Lus10016474.BGIv1.0 annot-version=v1.0 MARSATTKIHVTALDGIVNVNSLFTLALFVGLAQPLSSSSALISDSSCLPGSATAEDFVVFHVYAFASFLFSSLIALALKQAITLSDKTDAATPNTTSNF ASLIADLVGTGYYESLVHINLKALRVGTLVSGLGSIMGCGFLTMALVNLVQIKLGVLSCGGLYTISAIAPLVTLVPLASFIYVFLLLHAFTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10016474 [exp]	0	1
AT1G43790		TED6	tracheary element differentiat...		Lus10018925 [exp]	2.2	0.9884
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	2.4	0.9860
AT1G43790		TED6	tracheary element differentiat...		Lus10029760 [exp]	3.5	0.9831
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10034012 [exp]	4.2	0.9788
AT2G44260			Plant protein of unknown funct...		Lus10017580 [exp]	5.5	0.9777
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	6.5	0.9845
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	7.4	0.9830
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	7.7	0.9824
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008635 [exp]	8.7	0.9682
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030457 [exp]	9.2	0.9748

Compare expression of checked genes

Lus10016474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.