Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59070 564 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT4G19460 371 / 5e-124 UDP-Glycosyltransferase superfamily protein (.1) AT1G73160 332 / 4e-109 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040757 [exp] 903 / 0 AT5G59070 597 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10034760 [exp] 369 / 8e-123 AT4G19460 636 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10033297 [exp] 362 / 2e-120 AT4G19460 620 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014499 [exp] 352 / 5e-117 AT1G73160 616 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10032187 [exp] 351 / 2e-116 AT1G73160 615 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038400 [exp] 684 / 0 AT5G59070 609 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G105500 [exp] 388 / 7e-131 AT4G19460 664 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G128300 [exp] 384 / 3e-129 AT4G19460 645 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097000 [exp] 338 / 1e-111 AT1G73160 657 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10016475 pacid=23144810 polypeptide=Lus10016475 locus=Lus10016475.g ID=Lus10016475.BGIv1.0 annot-version=v1.0 ATGGCCAAGGATCAAATGGCTATCTTCAGCTTCCGTTGCTTCTGCTTCAGTATAGTTCTCCTCTCTGCAATTTCATCCATCTCATTCCTCTTCTGGTGTC AGTGTTCAGGTTCATGTTATTCCGAAACCCGGATGACATTCCAGAAGCAAACCCAAGCTATCAATCTACTCTCTCTTACTTCAGCTTGGAATCACCTCTC ATTCTCTTCAGAACCACCTCCAAGGCTCCTGAAAATCGCGCTCTTTGTGAAGAAATGGCCTCACAGATCTCACGCAGGAGGGCTCGAACGCCACGCCTTG ACCCTTCATCTCGCACTCGCCAGAAGAGGCCACGAGCTTCACATCTTCACCGCCTCAAACAACGGCTCGTTCCCCAGGTATGACCAGATGAGCAATCTGT ACTTTCACCTGTCGAAACCCACTGCTGCGGGATATTTAGACCAAGCCACTGTCTGGAAGCAGCTTCAGTCTCAGAATTTAACCGCGAGGCCTTTCGATGT GATCCACACGGAAAGTGTGGGACTGTTGCATACACGGGCACGGAATTTAACCAATCTAGCAGCCACTTGGCATGGGATTGCTTACGAGACGGTTCACACA GACATCATTCAGGAGCTTCTCCGAAGTTCCGAGGAGCCCCAGTCGTATGCACTGGCCGAAAGAGTGATCAAGGTAGTTGAAGAAGTGAGATTCTTCCAAA ACTATGCTCACCATGTTGCTACAAGTGATCATGCTGGAGATGTGTTGAGAAGGATCTATATGATCCCGGAAGAGCGAGTTCATGTGATTCTGAATGGAGT AGATGAAGATACTTTCAGGGTCGATCCAATGAGAGGGACGGAATTCAAGATGAAGTTTGGCGTTTCAAAGAAAAAATCTTTAGTATTGGGCATGGCGGGG AGGTTGGTTAAGGATAAAGGTCACCCTTTGATGTTCGAAGCGCTGAAACAAAGTCTAGCCGAAAACAAAGCTTTCCAGAATGATGTCGTAGTCCTGGTAG CCGGAGATGGTCCTTGGGGAGCAAGGTATAAAGATCTTGGAGCGAGTACCATAGTTTTGGGACCGTTGGATCATGCTCAGCTTGCGAGTTTCTACAATGC GATCGACATTTTTGTGAACCCGACACTTCGAGCTCAGGGACTGGATCATACGCTGCTCGAGGCGATGTTGTCTGGGAAGCCGATGATGGCCACACGAGTG GCCAGCATTACAGGGTCTGTGATTATGGGTGGAGAAATGGGTTACACTTTCTCACCGACGGTGGATTCGCTGAAGAAAGCTTTGTTGAAAGTGTGGAAAG ATGGAAGAGGAGTCCTGGAGAAGAAAGGAGAGAATTGTAGGCGGACTGGTTTGCAGCTCTTCACTGCAACAAAGATGGCGGCTGCTTATGAAAGGTTGTT CCTTTGTATAGCAGACCAAGATCAGTGTTGGTACCCGACTGTTAGTACCCGTTTAGCTTAG
AA sequence Show only first row Show all	>Lus10016475 pacid=23144810 polypeptide=Lus10016475 locus=Lus10016475.g ID=Lus10016475.BGIv1.0 annot-version=v1.0 MAKDQMAIFSFRCFCFSIVLLSAISSISFLFWCQCSGSCYSETRMTFQKQTQAINLLSLTSAWNHLSFSSEPPPRLLKIALFVKKWPHRSHAGGLERHAL TLHLALARRGHELHIFTASNNGSFPRYDQMSNLYFHLSKPTAAGYLDQATVWKQLQSQNLTARPFDVIHTESVGLLHTRARNLTNLAATWHGIAYETVHT DIIQELLRSSEEPQSYALAERVIKVVEEVRFFQNYAHHVATSDHAGDVLRRIYMIPEERVHVILNGVDEDTFRVDPMRGTEFKMKFGVSKKKSLVLGMAG RLVKDKGHPLMFEALKQSLAENKAFQNDVVVLVAGDGPWGARYKDLGASTIVLGPLDHAQLASFYNAIDIFVNPTLRAQGLDHTLLEAMLSGKPMMATRV ASITGSVIMGGEMGYTFSPTVDSLKKALLKVWKDGRGVLEKKGENCRRTGLQLFTATKMAAAYERLFLCIADQDQCWYPTVSTRLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59070			UDP-Glycosyltransferase superf...		Lus10016475 [exp]	0	1
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10000857 [exp]	2.8	0.9323
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	3.3	0.9408
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10043298 [exp]	5.9	0.8902
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013352 [exp]	6.2	0.9077
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10014384 [exp]	6.3	0.9190
AT2G43590			Chitinase family protein (.1)		Lus10010861 [exp]	10.5	0.9081
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10001816 [exp]	11.5	0.9181
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	11.7	0.9222
AT2G36380		ABCG34, PDR6, A...	ATP-binding cassette G34, plei...		Lus10023879 [exp]	12.3	0.8729
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10008097 [exp]	13.7	0.9176

Compare expression of checked genes

Lus10016475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.