Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54920 231 / 2e-69 unknown protein AT4G26990 217 / 7e-65 unknown protein AT3G14010 72 / 4e-13 CID4 CTC-interacting domain 4 (.1.2.3.4) AT1G54170 62 / 5e-10 CID3 CTC-interacting domain 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040755 [exp] 806 / 0 AT5G54920 269 / 6e-84 unknown protein Lus10015638 [exp] 65 / 8e-11 AT3G14010 294 / 2e-92 CTC-interacting domain 4 (.1.2.3.4) Lus10037656 [exp] 60 / 2e-09 AT3G14010 357 / 1e-114 CTC-interacting domain 4 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423200 [exp] 340 / 6e-111 AT5G54920 253 / 3e-77 unknown protein Potri.011G138600 [exp] 293 / 9e-93 AT5G54920 148 / 1e-38 unknown protein Potri.001G171100 [exp] 60 / 3e-09 AT3G14010 298 / 9e-93 CTC-interacting domain 4 (.1.2.3.4) Potri.003G063000 [exp] 53 / 3e-07 AT3G14010 322 / 9e-102 CTC-interacting domain 4 (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016477 pacid=23144791 polypeptide=Lus10016477 locus=Lus10016477.g ID=Lus10016477.BGIv1.0 annot-version=v1.0 ATGGGTTGCCCAAACAGAATTGAGACTGATCCTGCTGATACATGTGCGAGCGAGGCGCTGTTGATTGCTACTATGTGTATAATTGGTCTCCCTGTCGATG TGCACATTAGAGATGGCTCCGTCTACTCCGGAATATTCCATACTGCGTATGGTGATAAGGACTATGGGGTTGTTCTGAAACAAGCCAAATTAACTAAGAA GGGGAACTGCAACGTAAACACGGGTGATGGGAGTATGATAGAAACTCTTATAATCTATTCCAGTGATCTGGTTCAAGTTGTTGCCTGGGGGGTTTCATTG TCGGCTGAGGGCAGAAATGGTAGTGTCACAGATTACCATGTTGAAGCGTCTGTCACCAATGATCCTTCTGAGTTCACAGCAAAGGAACTTAAAGGATTGC CTCTGGATAGGCAAATTATTGATCAGAATAGACAGATTGGAGATGTATTGGCTCAAGTGACAGACAAACAGTGCAATCAAAAGCTTGAGTTTCAAGGCAA AACAAGTGTCGATGAAGTTCAATCCACAAGCACAGCATTGGGTTCTTTCCATACGGAAGTCAAACCTCTTGAGGGTGGATTCCTGTCAGCAAAAATGTTG CCATATGGAGCATCTCTTGCAACTGCTCCGGTACTCGGTAAGCAGACCAATGGATTCTGTGATAGGCCTGCATCTGCAGACTCCAGCTCTGCAAGTGGTG CTTCATCAGGGGTTTCTGTTGTTTCAAATCCTGTATCACGGCATAATTCCTTAACAATAGCTTCTGATGTAACATCTCCACAAAGTTCAGAATCCAATAG AAGCTCAAAGGAGTTCAAGCTCAACCCAGAAGCCAAAATATTTTGTCCCTCTTTTGCAAGTTCTGTGTCTGCAACTTCTCCAGCAGTTACAGTATCTGGT GGTATGACGTACGCCCATAGTAACTCCCCCATACTACCAGTTCCTGCTCCACAACCTGAAGTGGTAATCGGCCCTTTTGCACCCCGGCCATCTGTCCCTG CTAAGATTTCTCCGCATAATAACCTGATAGCTGGAAATGGAGGCAACAATACACAATTTTCACAGCATATGATTGGCCATATGGGAAGCCGGACTCCACC ACTTAGATATGCTGGTCAGTATCACACTGTACCAGCTGGACCTGCTTATGTGCCCCCAAATTCTCCACCTGTTATGATTGGACGGTTGGGGCAGCTTGTC TATATGCAGCCAGTTGGCCATGATTTACTTCAGAGTACAGGCGGTATGTCAGTAATGCCAGTACGTCCATTGATCGGTCCTCACCAGGTTCAATATCCTA AACACCAAGGAAATGTAGCAGCAGCAGCGGGACAAGGCGTACCAGTTTGCGTCCCACCTCCATTTGTACAGCAACCATTTGCACCAATGGCAGGCCACAT TCCACTCTTGCCACCTCCGAGCCCTGCGAATCGTCATCCGATTTCTGTTCCAGCATCCAACGCCCTGTTTGGCACCCGATTTCCGTGA
AA sequence Show only first row Show all	>Lus10016477 pacid=23144791 polypeptide=Lus10016477 locus=Lus10016477.g ID=Lus10016477.BGIv1.0 annot-version=v1.0 MGCPNRIETDPADTCASEALLIATMCIIGLPVDVHIRDGSVYSGIFHTAYGDKDYGVVLKQAKLTKKGNCNVNTGDGSMIETLIIYSSDLVQVVAWGVSL SAEGRNGSVTDYHVEASVTNDPSEFTAKELKGLPLDRQIIDQNRQIGDVLAQVTDKQCNQKLEFQGKTSVDEVQSTSTALGSFHTEVKPLEGGFLSAKML PYGASLATAPVLGKQTNGFCDRPASADSSSASGASSGVSVVSNPVSRHNSLTIASDVTSPQSSESNRSSKEFKLNPEAKIFCPSFASSVSATSPAVTVSG GMTYAHSNSPILPVPAPQPEVVIGPFAPRPSVPAKISPHNNLIAGNGGNNTQFSQHMIGHMGSRTPPLRYAGQYHTVPAGPAYVPPNSPPVMIGRLGQLV YMQPVGHDLLQSTGGMSVMPVRPLIGPHQVQYPKHQGNVAAAAGQGVPVCVPPPFVQQPFAPMAGHIPLLPPPSPANRHPISVPASNALFGTRFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54920			unknown protein		Lus10016477 [exp]	0	1
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10027491 [exp]	1.0	0.9150
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	3.5	0.9058
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	7.7	0.8740
AT2G42520			P-loop containing nucleoside t...		Lus10029337 [exp]	7.7	0.9054
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	8.1	0.8862
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10030084 [exp]	11.4	0.7898
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	13.9	0.8682
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	14.5	0.8851
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	14.6	0.8937
AT2G21630			Sec23/Sec24 protein transport ...		Lus10019516 [exp]	16.3	0.7897

Compare expression of checked genes

Lus10016477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.