Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54930 112 / 5e-29 AT hook motif-containing protein (.1.2) AT4G21895 71 / 2e-14 DNA binding (.1) AT5G52890 67 / 2e-12 AT hook motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040754 [exp] 417 / 3e-148 AT5G54930 132 / 1e-36 AT hook motif-containing protein (.1.2) Lus10002064 [exp] 81 / 6e-17 AT5G52890 114 / 4e-28 AT hook motif-containing protein (.1.2) Lus10001140 [exp] 81 / 7e-17 AT5G52890 113 / 2e-27 AT hook motif-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138700 [exp] 162 / 1e-46 AT5G54930 93 / 5e-21 AT hook motif-containing protein (.1.2) Potri.001G422966 [exp] 142 / 6e-40 AT5G54930 102 / 4e-25 AT hook motif-containing protein (.1.2) Potri.004G017000 [exp] 82 / 2e-17 AT4G21895 96 / 2e-22 DNA binding (.1) Potri.011G001901 [exp] 72 / 7e-14 AT4G21895 74 / 5e-15 DNA binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016478 pacid=23144856 polypeptide=Lus10016478 locus=Lus10016478.g ID=Lus10016478.BGIv1.0 annot-version=v1.0 ATGAACAATAATCCCAGTGTTTCAGCAATCATCCCTGCAAAACGTAAACGTGGTCGTCCACGCAAGCACCCGAAACCAGATCCTTATCATGTGGGAAGTT ATGACAGTTTAAACCGCCAGGAGAATTATAATGGTCCATCTGGAGGGGTCAACGGGAGTCAACCCAGGCAACAAAATTCAATGAATGATGTAATGTTAGG GCAGCCTGTCCATGGTGTTATTGAAGCAGTGTTTGATGCAGGGTACTTGCTCAGCGTGAGGGTTGGCAACTCAGACACCAACTTGAAGGGTGTGGTGTTC AAACCCGGGCAATATATTCCTGTTTCAGCTGAGAATGATATTGCCCCTGGTGTTCCAATGATTTCGAGAACGGAGTTTCCTATTCCAACACAAGACAATG CACAAATTTGCCGTAGGCGTCATTCTCGATCTAGAGAAAAGTATGGTACTGCACGTGGGACCCATGCTTCTAGTACGGTAGTCTCGAGAGGCGGCCAGGT ACTCCCTTTGATGCCTCAAACTGCCTCCTCGTCTGGGATCCCGAGAGGCAATGTCGTGCCTGTTGTACTCCAGCCGGTTACCCCATCAAATGGGGTAATG TCTGAACCATCTTCAGTTGTTATGGCTGCCTCTAAAGGTAAAGCTGCCGTAGATGTTTCTATTCCTAGAAGTGGATCATCGTTCGTGCAGCAACTGGAAG AAGCTGAGAAGCAGGCGAAACTTCAGGAATCTGAAACTATGAATCAGCAGCCGGTTCAACATCAATCGGATTTAAACTCCAACAGCTCAACGGAGCCTCC TGCATCAATGCAAATTCCAGAAGAACGTGATGGAAAATCAGGGAATGCAGAGTGGGGGAATCCCAGCAAGCCAGGATAA
AA sequence Show only first row Show all	>Lus10016478 pacid=23144856 polypeptide=Lus10016478 locus=Lus10016478.g ID=Lus10016478.BGIv1.0 annot-version=v1.0 MNNNPSVSAIIPAKRKRGRPRKHPKPDPYHVGSYDSLNRQENYNGPSGGVNGSQPRQQNSMNDVMLGQPVHGVIEAVFDAGYLLSVRVGNSDTNLKGVVF KPGQYIPVSAENDIAPGVPMISRTEFPIPTQDNAQICRRRHSRSREKYGTARGTHASSTVVSRGGQVLPLMPQTASSSGIPRGNVVPVVLQPVTPSNGVM SEPSSVVMAASKGKAAVDVSIPRSGSSFVQQLEEAEKQAKLQESETMNQQPVQHQSDLNSNSSTEPPASMQIPEERDGKSGNAEWGNPSKPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54930			AT hook motif-containing prote...		Lus10016478 [exp]	0	1
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10043200 [exp]	2.0	0.8613
AT5G08120		MPB2C, ATMBP2C,...	movement protein binding prote...		Lus10017881 [exp]	3.2	0.8445
AT1G74120			Mitochondrial transcription te...		Lus10021146 [exp]	3.5	0.8389
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	4.2	0.8426
AT4G03200			catalytics (.1.2)		Lus10003165 [exp]	7.3	0.8044
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	9.5	0.8372
AT5G41580			RING/U-box superfamily protein...		Lus10024682 [exp]	10.0	0.8348
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10035958 [exp]	13.4	0.8354
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	14.0	0.8404
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10008356 [exp]	14.8	0.8026

Compare expression of checked genes

Lus10016478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.