Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24670 373 / 2e-127 TAD3, EMB2820 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2) AT1G68720 44 / 0.0002 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) AT1G48175 41 / 0.0004 TAD1, EMB2191 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040753 [exp] 328 / 2e-110 AT5G24670 141 / 1e-49 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10034402 [exp] 45 / 0.0002 AT1G68720 436 / 2e-131 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Lus10019153 [exp] 45 / 0.0002 AT1G68720 301 / 2e-84 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G094800 [exp] 457 / 3e-160 AT5G24670 411 / 3e-142 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.008G111100 [exp] 47 / 3e-05 AT1G68720 522 / 3e-162 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Potri.010G132600 [exp] 44 / 0.0001 AT1G68720 555 / 2e-174 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10016480 pacid=23144889 polypeptide=Lus10016480 locus=Lus10016480.g ID=Lus10016480.BGIv1.0 annot-version=v1.0 ATGGCCGATGATGCGAAAAGTAACCGCTGCGTGGAAATCTGTCACATCCCTGACAGCCCACCGATCCCTCCTGATCAGCAACCCACCGTTAGCGTGTTTG CTTCAGTGATCAACGAGCCAAAGCAGGCCAATGCTCTCATAAGGCGGCTGAATCAGTTAGCTCCACTTGAGAATCTCCGCCATGTCAAGCGTATCCATAA GAGACGTCTTGAAGGAGGGAAAGTTGAACTCTCAATACTTGTTTGTCTTGCTTCTGGGAATGATGACCAGTGGAACAGCTTGCCCCAGGGTTTGAAAGAG CTTATTGAGTCCTACCAGTTGAGTCCTTTTGTCACACAAGTATGCAAATATGCTGCAACTTCTAAAGAACATTGGGAAGAGCAATGCAGGCTATGGCCGA CATCATACCATCCTCCTACGTTCAATATTGATGGCATTACCGGATTCAGTGATGAGGATGCACAATCAGTCTACCAGTTCATGAAAGTTGCTATTAAGTT GGCAAAGGCTAGTGACAATCTGATAACCAATGCTGCTGTGATTGTGGATCCTTCAGCACAGCAAATTATTGCAAGTGCGTGTGATCAAACACACTCACTG CATAATTACACAAACGAAAATGGCATTGGTGGTGGTAAATGCCACGAACAGCCGTCAGATCCTAAATGTAGCAATGGTTCAAATGGGAGGACATCAGAGG AAGAAAGATTTTGCATTGATGCTTCCTGTTTAAACCCTTGGCAGTGGTCTCAGACTGCTTCAACTTCTCACGATTGGCACCCCTTGCGGCATGCTGCTCT TGTTGCTATCGAATCTTCTTCAGACAGGGACCGGCGCCTCTTCCCTTGGTTCAACAATGCTGCAAATCAGTCCTTTCGAGAGGAGTCTGTGCTCTCTGTT TGTGCAAGGCCGCCTGCCAAAAGGCAGAAACCTCACCATGAAAATGTGGAGGCCGATGATGGATTAGATTCTTGCAATGAATATTCTAGTTCAGCATCGA CTAGACCTTATTTATGCACGGGTTACGACATTTACCTTGTTTGGGAGCCGTGCCCGATGTGTGCGATGGCACTAGTTCACCAGCGAATCAGGCGTATATT CTATGCATTTCCGAACACCAACGCAGGAGCCTTGGGCAGTGTTCACAGACTGCAAGGGGAGAAGAGCTTGAATCATCACTATGCTGTTTTCAGAGTGAAG TTCCTGAATGAAAGTCTGCTCTTTTAG
AA sequence Show only first row Show all	>Lus10016480 pacid=23144889 polypeptide=Lus10016480 locus=Lus10016480.g ID=Lus10016480.BGIv1.0 annot-version=v1.0 MADDAKSNRCVEICHIPDSPPIPPDQQPTVSVFASVINEPKQANALIRRLNQLAPLENLRHVKRIHKRRLEGGKVELSILVCLASGNDDQWNSLPQGLKE LIESYQLSPFVTQVCKYAATSKEHWEEQCRLWPTSYHPPTFNIDGITGFSDEDAQSVYQFMKVAIKLAKASDNLITNAAVIVDPSAQQIIASACDQTHSL HNYTNENGIGGGKCHEQPSDPKCSNGSNGRTSEEERFCIDASCLNPWQWSQTASTSHDWHPLRHAALVAIESSSDRDRRLFPWFNNAANQSFREESVLSV CARPPAKRQKPHHENVEADDGLDSCNEYSSSASTRPYLCTGYDIYLVWEPCPMCAMALVHQRIRRIFYAFPNTNAGALGSVHRLQGEKSLNHHYAVFRVK FLNESLLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	0	1
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	6.2	0.8270
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	6.6	0.8318
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10008234 [exp]	8.2	0.7875
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	10.2	0.8202
AT2G32000			DNA topoisomerase, type IA, co...		Lus10035035 [exp]	15.0	0.7878
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10034062 [exp]	15.2	0.7966
AT1G60200			splicing factor PWI domain-con...		Lus10029161 [exp]	16.7	0.8207
AT5G27730			Protein of unknown function (D...		Lus10021514 [exp]	17.2	0.8009
AT4G10050			esterase/lipase/thioesterase f...		Lus10006170 [exp]	18.0	0.8116
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030581 [exp]	21.0	0.7659

Compare expression of checked genes

Lus10016480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.