Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46850 667 / 0 Subtilase family protein (.1) AT5G59100 649 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59190 643 / 0 subtilase family protein (.1) AT3G46840 640 / 0 Subtilase family protein (.1) AT5G59120 634 / 0 ATSBT4.13 subtilase 4.13 (.1) AT5G58840 627 / 0 Subtilase family protein (.1) AT5G59090 622 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59130 616 / 0 Subtilase family protein (.1.2) AT5G58830 603 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G58820 589 / 0 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040750 [exp] 922 / 0 AT5G59120 714 / 0.0 subtilase 4.13 (.1) Lus10016484 [exp] 897 / 0 AT5G59100 672 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040751 [exp] 801 / 0 AT5G59100 632 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004685 [exp] 563 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10009867 [exp] 556 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10002964 [exp] 553 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004686 [exp] 548 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040253 [exp] 546 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10042555 [exp] 533 / 4e-180 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038001 [exp] 731 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 660 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 576 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 565 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.010G196800 [exp] 556 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.006G114500 [exp] 529 / 1e-178 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 523 / 3e-176 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.010G196700 [exp] 509 / 2e-172 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 472 / 1e-157 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.011G165900 [exp] 466 / 1e-153 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10016482 pacid=23144865 polypeptide=Lus10016482 locus=Lus10016482.g ID=Lus10016482.BGIv1.0 annot-version=v1.0 ATGGGAATACTCAGCTCGTTACTGCATATTCTCTCATTTTGTACCATCTATGTATCTATTGCCACCGCTGATACTAGCAATGGTGACCGGAAAGTTTATA TTGCTTACATGGGAGCACTTCCCAAGCATCAATACTCCCCCGCATCTCACCATCTCTCGCTAATCCAGGAGGTCGTCGACGACGACGATCGAAGTGAAGA GGTATTGATAAGGAGTTACAAGAGAAGTTTCAACGGATTTGCGGCCAAACTCACTGGCCGCGAAGCTCAAAAGCTTTCTAGGAGAAAAGATGTCGTCTCT GTTTTCCCAAGCGATAAGCTACGACTTCAGACCACGAGATCATGGGATTTCTTAGGTTTTCACCAACCAACAGTGATTGACAATCATAAAGCTGGCAGCG ATATCGTGATCGGAGTCATAGACACCGGGATTTGGCCAGAATCGCCCAGCTTTGATGATCGTGGTCTAGGCCCTCCTCCGGCCAAATGGAAGGGTGTGTG CAAAGGCGGGACCAATTTCACTTGCAACAACAAGATAATTGGAGCTCGGTATTACTCCAAACCCAATTCGGCAAGGGATGTCGTGGGTCACGGGTCTCAC ACGGCGTCAACGGCCGCGGGAAATGTGGTCAACAACGCGAGCTTTTACGGCGTAGCGAGCGGTGTCGCGAGAGGTGGACTCCCTTCGGCTAGGATCGCCA TGTACGCAGTTTGCGACACCGTTTCCTGCTCATCGGAAGACATTCTGGCCGCCTTCGACGACGCAATCGCCGATGGCGTCGACGTTATCTCCATTTCCAT CGGATCGAACACCGCCGGTGAGCTAGACGCACAGACCATCCCAATCGGAAGCCTCCACGCTTACAGGAGAGGAATCCTGACTGTACAGTCAGCCGGCAAC AGCGGTCCAAACGCCGGCAGCGTCACCAGCGTGGCTCCGTGGTTGCTCTCCGTGGCCGCGAGCACGATCGATCGGAAGTTCGAATCGAAGGTCGTTCTAG GAAACGGAAAGACCGTCACAGGAAGTTCGATCAATGGATTCGATCAGAAGGAAAATCATCAGTTTCCTTTGATTGATGGGATCAATGCGTCCACTGGCTG CGCTGATGGTCCAGCGAGTGATTGCCTTGATGGCTGTATAGACAGCAGTTTAGTGAAAGGGAAAATATTGTTATGCCAGTCGAACGCCGGGGAATTCACG GCTTTGAAGGCTGGGGCTGAAGGAGTCATCTTCCTTGGTAGAAGGCCAGGCTCGGGAAATGTAGTCCCGTTGCCTGGCGCGGAGGTGGATCAACAGAGCT TCGACATCATCACCGCATATCAGAACTCTACTGCTAATCCGGCTGCGAAAATATTGAAAAGTAATACTGTGAGGGACCCTGGAGCACCAGTAGTTCCCTC ATTCTCGTCCAGAGGACCCAATTCTATCATTTCTGCTATTCTCAAGCCGGATGTGAGTGCACCTGGAGTGAATATATTGGCCGGGTGGTCTCCGGCAGCA TCGCTAAGTGACGACCCGGATGACAAAAGAGAGTACCACTTCAATATTATATCCGGAACTTCTATGGCTTGTCCACATGTTGCCGGAATCGCTGCTTACA TCAAGTCTTTGTACCCGAATTGGTCACCTTCCGCCATTAAATCAGCCATCATTACCACCGCAACACCCATGGTTCCTGGTCCGGATCCTGCATTCGACAA TGCGGAATTTACATACGGATCTGGTCAACTGAATCCGGTGAATGCAACAAATCCAGGGCTCGTGTACGAAACCTCACTGCAGGACGACATCAATTTGCTA TGCAACTTGGGCTACGGTACCGACAGAGTCAGAGCGATTATTGGCGACAACACTACCAGATGCCCGGATCAACCCGACCAGGCAGCAATAAACGACTTCA ACTACCCGTCCATTTCTGCTGCCGTTCAGGCCAACAGCAATTCTTTCTCACTCAGATTTAAACGAACAGTGATGAATGTCGGATCCGCAAATTCAACATA CAGAGCACAAATCGTGCCGACAACAAAAGATGGGAGAGGGCTGAAGATCGAAGTGACGCCGCCAGTTTTGTCTTTCGGATCCTTAAATCAGAAGGTCCCT TTCACCGTTGGTGTCTCTGGCGGTAAAGTTCCGCCAGCAGACTATTTCGCTTCTGCTGCTCTGATCTGGAGCGATGGGGCTCATAGTGTTAGGAGTCCAA TTGTTATTTACACACCGTTGTTTTGA
AA sequence Show only first row Show all	>Lus10016482 pacid=23144865 polypeptide=Lus10016482 locus=Lus10016482.g ID=Lus10016482.BGIv1.0 annot-version=v1.0 MGILSSLLHILSFCTIYVSIATADTSNGDRKVYIAYMGALPKHQYSPASHHLSLIQEVVDDDDRSEEVLIRSYKRSFNGFAAKLTGREAQKLSRRKDVVS VFPSDKLRLQTTRSWDFLGFHQPTVIDNHKAGSDIVIGVIDTGIWPESPSFDDRGLGPPPAKWKGVCKGGTNFTCNNKIIGARYYSKPNSARDVVGHGSH TASTAAGNVVNNASFYGVASGVARGGLPSARIAMYAVCDTVSCSSEDILAAFDDAIADGVDVISISIGSNTAGELDAQTIPIGSLHAYRRGILTVQSAGN SGPNAGSVTSVAPWLLSVAASTIDRKFESKVVLGNGKTVTGSSINGFDQKENHQFPLIDGINASTGCADGPASDCLDGCIDSSLVKGKILLCQSNAGEFT ALKAGAEGVIFLGRRPGSGNVVPLPGAEVDQQSFDIITAYQNSTANPAAKILKSNTVRDPGAPVVPSFSSRGPNSIISAILKPDVSAPGVNILAGWSPAA SLSDDPDDKREYHFNIISGTSMACPHVAGIAAYIKSLYPNWSPSAIKSAIITTATPMVPGPDPAFDNAEFTYGSGQLNPVNATNPGLVYETSLQDDINLL CNLGYGTDRVRAIIGDNTTRCPDQPDQAAINDFNYPSISAAVQANSNSFSLRFKRTVMNVGSANSTYRAQIVPTTKDGRGLKIEVTPPVLSFGSLNQKVP FTVGVSGGKVPPADYFASAALIWSDGAHSVRSPIVIYTPLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46850			Subtilase family protein (.1)		Lus10016482 [exp]	0	1
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10017637 [exp]	18.8	0.7380
AT1G54070			Dormancy/auxin associated fami...		Lus10013180 [exp]	21.9	0.7015
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040585 [exp]	26.8	0.6952
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10035433 [exp]	44.4	0.7331
AT5G06130			chaperone protein dnaJ-related...		Lus10016993 [exp]	49.6	0.7095
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Lus10020478 [exp]	49.8	0.7015
AT5G04830			Nuclear transport factor 2 (NT...		Lus10028847 [exp]	62.4	0.6961
AT4G04780		MED21	mediator 21 (.1)		Lus10008009 [exp]	78.7	0.7079
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	80.5	0.7158
AT4G32340			Tetratricopeptide repeat (TPR)...		Lus10002013 [exp]	101.4	0.6824

Compare expression of checked genes

Lus10016482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.