Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58840 120 / 2e-32 Subtilase family protein (.1) AT5G59110 108 / 1e-30 subtilisin-like serine protease-related (.1) AT5G59090 114 / 3e-30 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59130 112 / 1e-29 Subtilase family protein (.1.2) AT5G58830 111 / 4e-29 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 109 / 2e-28 Subtilase family protein (.1) AT5G59120 109 / 2e-28 ATSBT4.13 subtilase 4.13 (.1) AT3G46840 108 / 3e-28 Subtilase family protein (.1) AT5G59100 108 / 3e-28 Subtilisin-like serine endopeptidase family protein (.1) AT5G58820 102 / 4e-26 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040751 [exp] 206 / 1e-62 AT5G59100 632 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10016484 [exp] 199 / 6e-61 AT5G59100 672 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040750 [exp] 187 / 2e-56 AT5G59120 714 / 0.0 subtilase 4.13 (.1) Lus10016482 [exp] 179 / 2e-53 AT3G46850 709 / 0.0 Subtilase family protein (.1) Lus10004685 [exp] 91 / 1e-21 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10009867 [exp] 90 / 2e-21 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10040253 [exp] 90 / 2e-21 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004681 [exp] 89 / 2e-21 AT5G59100 257 / 2e-79 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 89 / 5e-21 AT5G59190 600 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038001 [exp] 116 / 5e-31 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 96 / 1e-23 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 89 / 2e-21 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G071800 [exp] 86 / 3e-20 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.010G196800 [exp] 86 / 4e-20 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.001G163600 [exp] 85 / 5e-20 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.010G196900 [exp] 82 / 8e-19 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.001G455800 [exp] 78 / 2e-17 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3) Potri.014G171600 [exp] 77 / 3e-17 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G146300 [exp] 77 / 4e-17 AT4G10550 546 / 0.0 Subtilase family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016483 pacid=23144813 polypeptide=Lus10016483 locus=Lus10016483.g ID=Lus10016483.BGIv1.0 annot-version=v1.0 ATGACGGGCCAAATCCTAGTGTCACCAGAAGCGTTGCTCTGCAACTTGGGTTACAGCAACGACAAAGTCCAAGCAATCACCGGTGACAGGACTTGCAAGG GTAAATTCCATCCGGCAGCAATAAACGACTTCAATTACCCGTCAATTACCGCTGCCATCCAGCCCAAGAGTGTTGCGTCCTTCTCTGTTCAATTTACGAG AACGGTAACGAATGTCGGATCTGCGAAGTCGACGTACAAAGCACAAATTGTCGGCGGGAAAGGGCTGAAGATTGAAGTGACGCCGCCAATTCTGACATTT GCGTCTTTAAATGAGAAGATGACTTTCAATGTGACTGTTTCTGGTGGTAAGGTTCCATCCAAGGAATATTTTGCATCCGCTTCGTTGATTTGGAGTGACG GGACTCGTACCGTTACGAGTCCGATTGTCGTCTACACATAG
AA sequence Show only first row Show all	>Lus10016483 pacid=23144813 polypeptide=Lus10016483 locus=Lus10016483.g ID=Lus10016483.BGIv1.0 annot-version=v1.0 MTGQILVSPEALLCNLGYSNDKVQAITGDRTCKGKFHPAAINDFNYPSITAAIQPKSVASFSVQFTRTVTNVGSAKSTYKAQIVGGKGLKIEVTPPILTF ASLNEKMTFNVTVSGGKVPSKEYFASASLIWSDGTRTVTSPIVVYT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58840			Subtilase family protein (.1)		Lus10016483 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010699 [exp]	3.5	0.7563
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002613 [exp]	8.0	0.7366
					Lus10000400 [exp]	13.3	0.7295
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	15.4	0.7295
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	17.2	0.7295
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	18.8	0.7295
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10016500 [exp]	19.3	0.5764
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10017263 [exp]	20.2	0.6781
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	20.3	0.7295
					Lus10009372 [exp]	21.7	0.7295

Compare expression of checked genes

Lus10016483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.